PDB entry 6nkl

View 6nkl on RCSB PDB site
Description: 2.2 a resolution structure of vapbc-1 from nontypeable haemophilus influenzae
Deposited on 2019-01-07, released 2019-04-10
The last revision was dated 2020-05-06, with a file datestamp of 2020-05-01.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: N/A
AEROSPACI score: 0.27 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Ribonuclease VapC
    Species: Haemophilus influenzae [TaxId:727]
    Gene: vapC1, vapC, BV136_01367, BVZ80_01200, CH628_04345, NCTC11872_02278
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Ribonuclease VapC
    Species: Haemophilus influenzae [TaxId:727]
    Gene: vapC1, vapC, BV136_01367, BVZ80_01200, CH628_04345, NCTC11872_02278
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Antitoxin VapB1
    Species: Haemophilus influenzae [TaxId:727]
    Gene: vapB1, BV136_01366, BVZ80_01199, CH628_04350
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A2S9RDZ4 (18-End)
      • expression tag (16-17)
  • Chain 'D':
    Compound: Antitoxin VapB1
    Species: Haemophilus influenzae [TaxId:727]
    Gene: vapB1, BV136_01366, BVZ80_01199, CH628_04350
    Database cross-references and differences (RAF-indexed):
  • Heterogens: HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6nklA (A:)
miymldtniiiylmknrpkiiaervsqllpndrlvmsfityaelikgafgsqnyeqsira
ielltervnvlypneqiclhygkwantlkkqgrpignndlwiachalslnavlithnvke
fqritdlqwqdwtkllehhhhhh

    Sequence, based on observed residues (ATOM records):
    >6nklA (A:)
miymldtniiiylmknrpkiiaervsqllpndrlvmsfityaelikgafgsqnyeqsira
ielltervnvlypneqiclhygkwantlkkqgrpignndlwiachalslnavlithnvke
fqritdlqwqdwtk

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6nklB (B:)
miymldtniiiylmknrpkiiaervsqllpndrlvmsfityaelikgafgsqnyeqsira
ielltervnvlypneqiclhygkwantlkkqgrpignndlwiachalslnavlithnvke
fqritdlqwqdwtkllehhhhhh

    Sequence, based on observed residues (ATOM records):
    >6nklB (B:)
miymldtniiiylmknrpkiiaervsqllpndrlvmsfityaelikgafgsqnyeqsira
ielltervnvlypneqiclhygkwantlkkqgrpignndlwiachalslnavlithnvke
fqritdlqwqdwtkl

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6nklC (C:)
masmtggqqmgrdpnsssmltkvfqsgnsqavripmdfrfdvdtveifrkengdvvlrpv
skktddflalfegfdetfiqalearddlppqerenl

    Sequence, based on observed residues (ATOM records):
    >6nklC (C:)
ssmltkvfqsgnsqavripmdfrfdvdtveifrkengdvvlrpvskktddflalfegfde
tfiqalearddlpp

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6nklD (D:)
masmtggqqmgrdpnsssmltkvfqsgnsqavripmdfrfdvdtveifrkengdvvlrpv
skktddflalfegfdetfiqalearddlppqerenl

    Sequence, based on observed residues (ATOM records):
    >6nklD (D:)
smltkvfqsgnsqavripmdfrfdvdtveifrkengdvvlrpvskktddflalfegfdet
fiqaleardd