PDB entry 6nk7

View 6nk7 on RCSB PDB site
Description: electron cryo-microscopy of chikungunya in complex with mouse mxra8 receptor
Deposited on 2019-01-04, released 2019-05-22
The last revision was dated 2020-07-29, with a file datestamp of 2020-07-04.
Experiment type: EM
Resolution: 4.99 Å
R-factor: N/A
AEROSPACI score: 0.01 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: E1 glycoprotein
    Species: Chikungunya virus [TaxId:37124]
    Gene: CHIKVgp2
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: E1 glycoprotein
    Species: Chikungunya virus [TaxId:37124]
    Gene: CHIKVgp2
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: E1 glycoprotein
    Species: Chikungunya virus [TaxId:37124]
    Gene: CHIKVgp2
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: E1 glycoprotein
    Species: Chikungunya virus [TaxId:37124]
    Gene: CHIKVgp2
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: e2 glycoprotein
    Species: Chikungunya virus [TaxId:37124]
    Gene: CHIKVgp2
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: e2 glycoprotein
    Species: Chikungunya virus [TaxId:37124]
    Gene: CHIKVgp2
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: e2 glycoprotein
    Species: Chikungunya virus [TaxId:37124]
    Gene: CHIKVgp2
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: e2 glycoprotein
    Species: Chikungunya virus [TaxId:37124]
    Gene: CHIKVgp2
    Database cross-references and differences (RAF-indexed):
  • Chain 'I':
    Compound: capsid protein
    Species: Chikungunya virus [TaxId:37124]
    Gene: CHIKVgp2
    Database cross-references and differences (RAF-indexed):
  • Chain 'J':
    Compound: capsid protein
    Species: Chikungunya virus [TaxId:37124]
    Gene: CHIKVgp2
    Database cross-references and differences (RAF-indexed):
  • Chain 'K':
    Compound: capsid protein
    Species: Chikungunya virus [TaxId:37124]
    Gene: CHIKVgp2
    Database cross-references and differences (RAF-indexed):
  • Chain 'L':
    Compound: capsid protein
    Species: Chikungunya virus [TaxId:37124]
    Gene: CHIKVgp2
    Database cross-references and differences (RAF-indexed):
  • Chain 'N':
    Compound: Matrix remodeling-associated protein 8
    Species: Mus musculus [TaxId:10090]
    Gene: Mxra8, Asp3, Dicam
    Database cross-references and differences (RAF-indexed):
  • Chain 'U':
    Compound: E3 glycoprotein
    Species: Chikungunya virus [TaxId:37124]
    Database cross-references and differences (RAF-indexed):
  • Chain 'V':
    Compound: E3 glycoprotein
    Species: Chikungunya virus [TaxId:37124]
    Database cross-references and differences (RAF-indexed):
  • Chain 'W':
    Compound: E3 glycoprotein
    Species: Chikungunya virus [TaxId:37124]
    Database cross-references and differences (RAF-indexed):
  • Chain 'X':
    Compound: E3 glycoprotein
    Species: Chikungunya virus [TaxId:37124]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: NAG

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records:
    >6nk7A (A:)
    yehvtvipntvgvpyktlvnrpgyspmvlemellsvtleptlsldyitceyktvipspyv
    kccgtaeckdkslpdysckvftgvypfmwggaycfcdtentqlseahveksescktefas
    ayrahtasasaklrvlyqgnnvtvsayangdhavtvkdakfivgpmssawtpfdnkivvy
    kgdvynmdyppfgagrpgqfgdiqsrtpesedvyantqlvlqrpsagtvhvpysqapsgf
    kywlkergaslqhtapfgcqiatnpvramncavgnmpisidipdaaftrvvdapsltdms
    cevpacthssdfggvaiikyaaskkgkcavhsmtnavtireaeievegnsqlqisfstal
    asaefrvqvcstqvhcaaechppkdhivnypashttlgvqdisvtamswvqkitggvglv
    vavaalilivvlcvsfsrh
    

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records:
    >6nk7B (B:)
    yehvtvipntvgvpyktlvnrpgyspmvlemellsvtleptlsldyitceyktvipspyv
    kccgtaeckdkslpdysckvftgvypfmwggaycfcdtentqlseahveksescktefas
    ayrahtasasaklrvlyqgnnvtvsayangdhavtvkdakfivgpmssawtpfdnkivvy
    kgdvynmdyppfgagrpgqfgdiqsrtpesedvyantqlvlqrpsagtvhvpysqapsgf
    kywlkergaslqhtapfgcqiatnpvramncavgnmpisidipdaaftrvvdapsltdms
    cevpacthssdfggvaiikyaaskkgkcavhsmtnavtireaeievegnsqlqisfstal
    asaefrvqvcstqvhcaaechppkdhivnypashttlgvqdisvtamswvqkitggvglv
    vavaalilivvlcvsfsrh
    

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records:
    >6nk7C (C:)
    yehvtvipntvgvpyktlvnrpgyspmvlemellsvtleptlsldyitceyktvipspyv
    kccgtaeckdkslpdysckvftgvypfmwggaycfcdtentqlseahveksescktefas
    ayrahtasasaklrvlyqgnnvtvsayangdhavtvkdakfivgpmssawtpfdnkivvy
    kgdvynmdyppfgagrpgqfgdiqsrtpesedvyantqlvlqrpsagtvhvpysqapsgf
    kywlkergaslqhtapfgcqiatnpvramncavgnmpisidipdaaftrvvdapsltdms
    cevpacthssdfggvaiikyaaskkgkcavhsmtnavtireaeievegnsqlqisfstal
    asaefrvqvcstqvhcaaechppkdhivnypashttlgvqdisvtamswvqkitggvglv
    vavaalilivvlcvsfsrh
    

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records:
    >6nk7D (D:)
    yehvtvipntvgvpyktlvnrpgyspmvlemellsvtleptlsldyitceyktvipspyv
    kccgtaeckdkslpdysckvftgvypfmwggaycfcdtentqlseahveksescktefas
    ayrahtasasaklrvlyqgnnvtvsayangdhavtvkdakfivgpmssawtpfdnkivvy
    kgdvynmdyppfgagrpgqfgdiqsrtpesedvyantqlvlqrpsagtvhvpysqapsgf
    kywlkergaslqhtapfgcqiatnpvramncavgnmpisidipdaaftrvvdapsltdms
    cevpacthssdfggvaiikyaaskkgkcavhsmtnavtireaeievegnsqlqisfstal
    asaefrvqvcstqvhcaaechppkdhivnypashttlgvqdisvtamswvqkitggvglv
    vavaalilivvlcvsfsrh
    

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records:
    >6nk7E (E:)
    nfnvykairpylahcpdcgeghschspvalerirneatdgtlkiqvslqigiktddshdw
    tklrymdnhmpadaerarlfvrtsapctitgtmghfilarcpkgetltvgftdgrkishs
    cthpfhhdppvigrekfhsrpqhgrelpcstyaqstaataeeievhmppdtpdrtlmsqq
    sgnvkitvnsqtvrykcncgdsnegltttdkvinnckvdqchaavtnhkkwqynsplvpr
    naelgdrkgkvhipfplanvtcrvpkarnptvtygknqvimllypdhptllsyrnmgeep
    nyqeewvthkkeirltvpteglevtwgnnepykywpqlstngtahghpheiilyyyelyp
    tmtvvvvsvasfvllsmvgvavgmcmcarrrcitpyeltpgatvpfllsliccirtaka
    

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records:
    >6nk7F (F:)
    nfnvykairpylahcpdcgeghschspvalerirneatdgtlkiqvslqigiktddshdw
    tklrymdnhmpadaerarlfvrtsapctitgtmghfilarcpkgetltvgftdgrkishs
    cthpfhhdppvigrekfhsrpqhgrelpcstyaqstaataeeievhmppdtpdrtlmsqq
    sgnvkitvnsqtvrykcncgdsnegltttdkvinnckvdqchaavtnhkkwqynsplvpr
    naelgdrkgkvhipfplanvtcrvpkarnptvtygknqvimllypdhptllsyrnmgeep
    nyqeewvthkkeirltvpteglevtwgnnepykywpqlstngtahghpheiilyyyelyp
    tmtvvvvsvasfvllsmvgvavgmcmcarrrcitpyeltpgatvpfllsliccirtaka
    

  • Chain 'G':
    Sequence; same for both SEQRES and ATOM records:
    >6nk7G (G:)
    nfnvykairpylahcpdcgeghschspvalerirneatdgtlkiqvslqigiktddshdw
    tklrymdnhmpadaerarlfvrtsapctitgtmghfilarcpkgetltvgftdgrkishs
    cthpfhhdppvigrekfhsrpqhgrelpcstyaqstaataeeievhmppdtpdrtlmsqq
    sgnvkitvnsqtvrykcncgdsnegltttdkvinnckvdqchaavtnhkkwqynsplvpr
    naelgdrkgkvhipfplanvtcrvpkarnptvtygknqvimllypdhptllsyrnmgeep
    nyqeewvthkkeirltvpteglevtwgnnepykywpqlstngtahghpheiilyyyelyp
    tmtvvvvsvasfvllsmvgvavgmcmcarrrcitpyeltpgatvpfllsliccirtaka
    

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records:
    >6nk7H (H:)
    nfnvykairpylahcpdcgeghschspvalerirneatdgtlkiqvslqigiktddshdw
    tklrymdnhmpadaerarlfvrtsapctitgtmghfilarcpkgetltvgftdgrkishs
    cthpfhhdppvigrekfhsrpqhgrelpcstyaqstaataeeievhmppdtpdrtlmsqq
    sgnvkitvnsqtvrykcncgdsnegltttdkvinnckvdqchaavtnhkkwqynsplvpr
    naelgdrkgkvhipfplanvtcrvpkarnptvtygknqvimllypdhptllsyrnmgeep
    nyqeewvthkkeirltvpteglevtwgnnepykywpqlstngtahghpheiilyyyelyp
    tmtvvvvsvasfvllsmvgvavgmcmcarrrcitpyeltpgatvpfllsliccirtaka
    

  • Chain 'I':
    Sequence; same for both SEQRES and ATOM records:
    >6nk7I (I:)
    ndcifevkhegkvtgyaclvgdkvmkpahvkgtidnadlaklafkrsskydlecaqipvh
    mksdaskfthekpegyynwhhgavqysggrftiptgagkpgdsgrpifdnkgrvvaivlg
    ganegartalsvvtwnkdivtkitpegaeew
    

  • Chain 'J':
    Sequence; same for both SEQRES and ATOM records:
    >6nk7J (J:)
    ndcifevkhegkvtgyaclvgdkvmkpahvkgtidnadlaklafkrsskydlecaqipvh
    mksdaskfthekpegyynwhhgavqysggrftiptgagkpgdsgrpifdnkgrvvaivlg
    ganegartalsvvtwnkdivtkitpegaeew
    

  • Chain 'K':
    Sequence; same for both SEQRES and ATOM records:
    >6nk7K (K:)
    ndcifevkhegkvtgyaclvgdkvmkpahvkgtidnadlaklafkrsskydlecaqipvh
    mksdaskfthekpegyynwhhgavqysggrftiptgagkpgdsgrpifdnkgrvvaivlg
    ganegartalsvvtwnkdivtkitpegaeew
    

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records:
    >6nk7L (L:)
    ndcifevkhegkvtgyaclvgdkvmkpahvkgtidnadlaklafkrsskydlecaqipvh
    mksdaskfthekpegyynwhhgavqysggrftiptgagkpgdsgrpifdnkgrvvaivlg
    ganegartalsvvtwnkdivtkitpegaeew
    

  • Chain 'N':
    Sequence; same for both SEQRES and ATOM records:
    >6nk7N (N:)
    ssslvsesvvslaagtqavlrcqsprmvwtqdrlhdrqrvvhwdlsggpgsqrrrlvdmy
    sageqrvyeprdrdrlllspsafhdgnfslliravdrgdegvytcnlhhhychldeslav
    rlevtedpllsraywdgekevlvvahgapalmtcinrahvwtdrhleeaqqvvhwdrqlp
    gvshdradrlldlyasgerraygppflrdrvsvntnafargdfslrideleradegiysc
    hlhhhycglherrvfhlqvte
    

  • Chain 'U':
    Sequence; same for both SEQRES and ATOM records:
    >6nk7U (U:)
    pvmcllanttfpcsqppctpccyekepeetlrmlednvmrpgyyqllqasltcsphrqrr
    

  • Chain 'V':
    Sequence; same for both SEQRES and ATOM records:
    >6nk7V (V:)
    pvmcllanttfpcsqppctpccyekepeetlrmlednvmrpgyyqllqasltcsphrqrr
    

  • Chain 'W':
    Sequence; same for both SEQRES and ATOM records:
    >6nk7W (W:)
    pvmcllanttfpcsqppctpccyekepeetlrmlednvmrpgyyqllqasltcsphrqrr
    

  • Chain 'X':
    Sequence; same for both SEQRES and ATOM records:
    >6nk7X (X:)
    pvmcllanttfpcsqppctpccyekepeetlrmlednvmrpgyyqllqasltcsphrqrr