PDB entry 6nk6

View 6nk6 on RCSB PDB site
Description: electron cryo-microscopy of chikungunya vlp in complex with mouse mxra8 receptor
Deposited on 2019-01-04, released 2019-05-22
The last revision was dated 2020-07-29, with a file datestamp of 2020-07-04.
Experiment type: EM
Resolution: 4.06 Å
R-factor: N/A
AEROSPACI score: 0.1 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: E1 glycoprotein
    Species: Chikungunya virus strain Senegal 37997 [TaxId:371095]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: E1 glycoprotein
    Species: Chikungunya virus strain Senegal 37997 [TaxId:371095]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: E1 glycoprotein
    Species: Chikungunya virus strain Senegal 37997 [TaxId:371095]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: E1 glycoprotein
    Species: Chikungunya virus strain Senegal 37997 [TaxId:371095]
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: e2 glycoprotein
    Species: Chikungunya virus strain Senegal 37997 [TaxId:371095]
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: e2 glycoprotein
    Species: Chikungunya virus strain Senegal 37997 [TaxId:371095]
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: e2 glycoprotein
    Species: Chikungunya virus strain Senegal 37997 [TaxId:371095]
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: e2 glycoprotein
    Species: Chikungunya virus strain Senegal 37997 [TaxId:371095]
    Database cross-references and differences (RAF-indexed):
  • Chain 'I':
    Compound: capsid protein
    Species: Chikungunya virus strain Senegal 37997 [TaxId:371095]
    Database cross-references and differences (RAF-indexed):
  • Chain 'J':
    Compound: capsid protein
    Species: Chikungunya virus strain Senegal 37997 [TaxId:371095]
    Database cross-references and differences (RAF-indexed):
  • Chain 'K':
    Compound: capsid protein
    Species: Chikungunya virus strain Senegal 37997 [TaxId:371095]
    Database cross-references and differences (RAF-indexed):
  • Chain 'L':
    Compound: capsid protein
    Species: Chikungunya virus strain Senegal 37997 [TaxId:371095]
    Database cross-references and differences (RAF-indexed):
  • Chain 'M':
    Compound: Matrix remodeling-associated protein 8
    Species: Mus musculus [TaxId:10090]
    Gene: Mxra8, Asp3, Dicam
    Database cross-references and differences (RAF-indexed):
  • Chain 'N':
    Compound: Matrix remodeling-associated protein 8
    Species: Mus musculus [TaxId:10090]
    Gene: Mxra8, Asp3, Dicam
    Database cross-references and differences (RAF-indexed):
  • Chain 'O':
    Compound: Matrix remodeling-associated protein 8
    Species: Mus musculus [TaxId:10090]
    Gene: Mxra8, Asp3, Dicam
    Database cross-references and differences (RAF-indexed):
  • Chain 'P':
    Compound: Matrix remodeling-associated protein 8
    Species: Mus musculus [TaxId:10090]
    Gene: Mxra8, Asp3, Dicam
    Database cross-references and differences (RAF-indexed):
  • Heterogens: NAG

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records:
    >6nk6A (A:)
    yehvtvipntvgvpyktlvnrpgyspmvlemelqsvtleptlsldyitceyktvipspyv
    kccgtaeckdkslpdysckvftgvypfmwggaycfcdaentqlseahveksescktefas
    ayrahtasasaklrvlyqgnnitvaayangdhavtvkdakfvvgpmssawtpfdnkivvy
    kgdvynmdyppfgagrpgqfgdiqsrtpeskdvyantqlvlqrpaagtvhvpysqapsgf
    kywlkergaslqhtapfgcqiatnpvravncavgnipisidipdaaftrvvdapsvtdms
    cevpacthssdfggvaiikytaskkgkcavhsmtnavtireadvevegnsqlqisfstal
    asaefrvqvcstqvhcaaachppkdhivnypashttlgvqdisttamswvqkitggvgli
    vavaalilivvlcvsfsrh
    

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records:
    >6nk6B (B:)
    yehvtvipntvgvpyktlvnrpgyspmvlemelqsvtleptlsldyitceyktvipspyv
    kccgtaeckdkslpdysckvftgvypfmwggaycfcdaentqlseahveksescktefas
    ayrahtasasaklrvlyqgnnitvaayangdhavtvkdakfvvgpmssawtpfdnkivvy
    kgdvynmdyppfgagrpgqfgdiqsrtpeskdvyantqlvlqrpaagtvhvpysqapsgf
    kywlkergaslqhtapfgcqiatnpvravncavgnipisidipdaaftrvvdapsvtdms
    cevpacthssdfggvaiikytaskkgkcavhsmtnavtireadvevegnsqlqisfstal
    asaefrvqvcstqvhcaaachppkdhivnypashttlgvqdisttamswvqkitggvgli
    vavaalilivvlcvsfsrh
    

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records:
    >6nk6C (C:)
    yehvtvipntvgvpyktlvnrpgyspmvlemelqsvtleptlsldyitceyktvipspyv
    kccgtaeckdkslpdysckvftgvypfmwggaycfcdaentqlseahveksescktefas
    ayrahtasasaklrvlyqgnnitvaayangdhavtvkdakfvvgpmssawtpfdnkivvy
    kgdvynmdyppfgagrpgqfgdiqsrtpeskdvyantqlvlqrpaagtvhvpysqapsgf
    kywlkergaslqhtapfgcqiatnpvravncavgnipisidipdaaftrvvdapsvtdms
    cevpacthssdfggvaiikytaskkgkcavhsmtnavtireadvevegnsqlqisfstal
    asaefrvqvcstqvhcaaachppkdhivnypashttlgvqdisttamswvqkitggvgli
    vavaalilivvlcvsfsrh
    

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records:
    >6nk6D (D:)
    yehvtvipntvgvpyktlvnrpgyspmvlemelqsvtleptlsldyitceyktvipspyv
    kccgtaeckdkslpdysckvftgvypfmwggaycfcdaentqlseahveksescktefas
    ayrahtasasaklrvlyqgnnitvaayangdhavtvkdakfvvgpmssawtpfdnkivvy
    kgdvynmdyppfgagrpgqfgdiqsrtpeskdvyantqlvlqrpaagtvhvpysqapsgf
    kywlkergaslqhtapfgcqiatnpvravncavgnipisidipdaaftrvvdapsvtdms
    cevpacthssdfggvaiikytaskkgkcavhsmtnavtireadvevegnsqlqisfstal
    asaefrvqvcstqvhcaaachppkdhivnypashttlgvqdisttamswvqkitggvgli
    vavaalilivvlcvsfsrh
    

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records:
    >6nk6E (E:)
    nfnvykatrpylahcpdcgeghschspialerirneatdgtlkiqvslqigiktddshdw
    tklrymdshtpadaeragllvrtsapctitgtmghfilarcpkgetltvgftdsrkisht
    cthpfhheppvigrerfhsrpqhgkelpcstyvqstaataeeievhmppdtpdrtlmtqq
    sgnvkitvngqtvrykcncggsnegltttdkvinnckidqchaavtnhknwqynsplvpr
    naelgdrkgkihipfplanvtcrvpkarnptvtygknqvtmllypdhptllsyrnmgqep
    nyheewvthkkevtltvpteglevtwgnnepykywpqmstngtahghpheiilyyyelyp
    tmtvvivsvasfvllsmvgtavgmcvcarrrcitpyeltpgatvpfllsllccvrttka
    

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records:
    >6nk6F (F:)
    nfnvykatrpylahcpdcgeghschspialerirneatdgtlkiqvslqigiktddshdw
    tklrymdshtpadaeragllvrtsapctitgtmghfilarcpkgetltvgftdsrkisht
    cthpfhheppvigrerfhsrpqhgkelpcstyvqstaataeeievhmppdtpdrtlmtqq
    sgnvkitvngqtvrykcncggsnegltttdkvinnckidqchaavtnhknwqynsplvpr
    naelgdrkgkihipfplanvtcrvpkarnptvtygknqvtmllypdhptllsyrnmgqep
    nyheewvthkkevtltvpteglevtwgnnepykywpqmstngtahghpheiilyyyelyp
    tmtvvivsvasfvllsmvgtavgmcvcarrrcitpyeltpgatvpfllsllccvrttka
    

  • Chain 'G':
    Sequence; same for both SEQRES and ATOM records:
    >6nk6G (G:)
    nfnvykatrpylahcpdcgeghschspialerirneatdgtlkiqvslqigiktddshdw
    tklrymdshtpadaeragllvrtsapctitgtmghfilarcpkgetltvgftdsrkisht
    cthpfhheppvigrerfhsrpqhgkelpcstyvqstaataeeievhmppdtpdrtlmtqq
    sgnvkitvngqtvrykcncggsnegltttdkvinnckidqchaavtnhknwqynsplvpr
    naelgdrkgkihipfplanvtcrvpkarnptvtygknqvtmllypdhptllsyrnmgqep
    nyheewvthkkevtltvpteglevtwgnnepykywpqmstngtahghpheiilyyyelyp
    tmtvvivsvasfvllsmvgtavgmcvcarrrcitpyeltpgatvpfllsllccvrttka
    

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records:
    >6nk6H (H:)
    nfnvykatrpylahcpdcgeghschspialerirneatdgtlkiqvslqigiktddshdw
    tklrymdshtpadaeragllvrtsapctitgtmghfilarcpkgetltvgftdsrkisht
    cthpfhheppvigrerfhsrpqhgkelpcstyvqstaataeeievhmppdtpdrtlmtqq
    sgnvkitvngqtvrykcncggsnegltttdkvinnckidqchaavtnhknwqynsplvpr
    naelgdrkgkihipfplanvtcrvpkarnptvtygknqvtmllypdhptllsyrnmgqep
    nyheewvthkkevtltvpteglevtwgnnepykywpqmstngtahghpheiilyyyelyp
    tmtvvivsvasfvllsmvgtavgmcvcarrrcitpyeltpgatvpfllsllccvrttka
    

  • Chain 'I':
    Sequence; same for both SEQRES and ATOM records:
    >6nk6I (I:)
    ndcifevkhegkvmgyaclvgdkvmkpahvkgtidnadlaklafkrsskydlecaqipvh
    mksdaskfthekpegyynwhhgavqysggrftiptgagkpgdsgrpifdnkgrvvaivlg
    ganegartalsvvtwnkdivtkitpegaeew
    

  • Chain 'J':
    Sequence; same for both SEQRES and ATOM records:
    >6nk6J (J:)
    ndcifevkhegkvmgyaclvgdkvmkpahvkgtidnadlaklafkrsskydlecaqipvh
    mksdaskfthekpegyynwhhgavqysggrftiptgagkpgdsgrpifdnkgrvvaivlg
    ganegartalsvvtwnkdivtkitpegaeew
    

  • Chain 'K':
    Sequence; same for both SEQRES and ATOM records:
    >6nk6K (K:)
    ndcifevkhegkvmgyaclvgdkvmkpahvkgtidnadlaklafkrsskydlecaqipvh
    mksdaskfthekpegyynwhhgavqysggrftiptgagkpgdsgrpifdnkgrvvaivlg
    ganegartalsvvtwnkdivtkitpegaeew
    

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records:
    >6nk6L (L:)
    ndcifevkhegkvmgyaclvgdkvmkpahvkgtidnadlaklafkrsskydlecaqipvh
    mksdaskfthekpegyynwhhgavqysggrftiptgagkpgdsgrpifdnkgrvvaivlg
    ganegartalsvvtwnkdivtkitpegaeew
    

  • Chain 'M':
    Sequence; same for both SEQRES and ATOM records:
    >6nk6M (M:)
    ssslvsesvvslaagtqavlrcqsprmvwtqdrlhdrqrvvhwdlsggpgsqrrrlvdmy
    sageqrvyeprdrdrlllspsafhdgnfslliravdrgdegvytcnlhhhychldeslav
    rlevtedpllsraywdgekevlvvahgapalmtcinrahvwtdrhleeaqqvvhwdrqlp
    gvshdradrlldlyasgerraygppflrdrvsvntnafargdfslrideleradegiysc
    hlhhhycglherrvfhlqvtepafeppsa
    

  • Chain 'N':
    Sequence, based on SEQRES records:
    >6nk6N (N:)
    ssslvsesvvslaagtqavlrcqsprmvwtqdrlhdrqrvvhwdlsggpgsqrrrlvdmy
    sageqrvyeprdrdrlllspsafhdgnfslliravdrgdegvytcnlhhhychldeslav
    rlevtedpllsraywdgekevlvvahgapalmtcinrahvwtdrhleeaqqvvhwdrqlp
    gvshdradrlldlyasgerraygppflrdrvsvntnafargdfslrideleradegiysc
    hlhhhycglherrvfhlqvtepafeppsa
    

    Sequence, based on observed residues (ATOM records):
    >6nk6N (N:)
    ssslvsesvvslaagtqavlrcqsprmvwtqdrlhdrqrvvhwdlsggpgsqrrrlvdmy
    sageqrvyeprdrdrlllspsafhdgnfslliravdrgdegvytcnlhhhychldeslav
    rlevtedpllsraywdgekevlvvahgapalmtcinrahvwtdrhleeaqqvvhwdrqlp
    gvshdradrlldlyasgerraygppflrdrvsvntnafargdfslrideleradegiysc
    hlhhhycglherrvfhlqvte
    

  • Chain 'O':
    Sequence; same for both SEQRES and ATOM records:
    >6nk6O (O:)
    ssslvsesvvslaagtqavlrcqsprmvwtqdrlhdrqrvvhwdlsggpgsqrrrlvdmy
    sageqrvyeprdrdrlllspsafhdgnfslliravdrgdegvytcnlhhhychldeslav
    rlevtedpllsraywdgekevlvvahgapalmtcinrahvwtdrhleeaqqvvhwdrqlp
    gvshdradrlldlyasgerraygppflrdrvsvntnafargdfslrideleradegiysc
    hlhhhycglherrvfhlqvtepafeppsa
    

  • Chain 'P':
    Sequence; same for both SEQRES and ATOM records:
    >6nk6P (P:)
    ssslvsesvvslaagtqavlrcqsprmvwtqdrlhdrqrvvhwdlsggpgsqrrrlvdmy
    sageqrvyeprdrdrlllspsafhdgnfslliravdrgdegvytcnlhhhychldeslav
    rlevtedpllsraywdgekevlvvahgapalmtcinrahvwtdrhleeaqqvvhwdrqlp
    gvshdradrlldlyasgerraygppflrdrvsvntnafargdfslrideleradegiysc
    hlhhhycglherrvfhlqvtepafeppsa