PDB entry 6njp

View 6njp on RCSB PDB site
Description: structure of the assembled atpase escn in complex with its central stalk esco from the enteropathogenic e. coli (epec) type iii secretion system
Deposited on 2019-01-03, released 2019-02-20
The last revision was dated 2019-11-20, with a file datestamp of 2019-11-15.
Experiment type: EM
Resolution: 3.29 Å
R-factor: N/A
AEROSPACI score: 0.11 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Translocator EscN
    Species: Escherichia coli O127:H6 (strain E2348/69 / EPEC) [TaxId:574521]
    Gene: escN, E2348C_3948
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Translocator EscN
    Species: Escherichia coli O127:H6 (strain E2348/69 / EPEC) [TaxId:574521]
    Gene: escN, E2348C_3948
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Translocator EscN
    Species: Escherichia coli O127:H6 (strain E2348/69 / EPEC) [TaxId:574521]
    Gene: escN, E2348C_3948
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Translocator EscN
    Species: Escherichia coli O127:H6 (strain E2348/69 / EPEC) [TaxId:574521]
    Gene: escN, E2348C_3948
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Translocator EscN
    Species: Escherichia coli O127:H6 (strain E2348/69 / EPEC) [TaxId:574521]
    Gene: escN, E2348C_3948
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Translocator EscN
    Species: Escherichia coli O127:H6 (strain E2348/69 / EPEC) [TaxId:574521]
    Gene: escN, E2348C_3948
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: EscO
    Species: Escherichia coli O127:H6 (strain E2348/69 / EPEC) [TaxId:574521]
    Gene: E2348C_3947
    Database cross-references and differences (RAF-indexed):
    • Uniprot B7UMA5 (3-End)
      • expression tag (2)
  • Heterogens: ADP, MG, AF3, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6njpA (A:)
gshmisehdsvlekypriqkvlnstvpalslnsstryegkiiniggtiikarlpkariga
fykiepsqrlaeviaidedevfllpfehvsgmycgqwlsyqgdefkirvgdallgrlidg
igrpmesnivapylpferslyaeppdpllrqvidqpfilgvraidglltcgigqrigifa
gsgvgkstllgmicngasadiivlaligergrevneflallpqstlskcvlvvttsdrpa
lermkaaftattiaeyfrdqgknvllmmdsvtryaraardvglasgepdvrggfppsvfs
slpklleragpapkgsitaiytvllesdnvndpigdevrsildghivltrelaeenhfpa
idiglsasrvmhnvvtsehlraaaeckkliatyknvellirigeytmgqdpeadkaiknr
kliqnfiqqstkdissyektieslfkvva

    Sequence, based on observed residues (ATOM records):
    >6njpA (A:)
egkiiniggtiikarlpkarigafykiepsqrlaeviaidedevfllpfehvsgmycgqw
lsyqgdefkirvgdallgrlidgigrpmesnivapylpferslyaeppdpllrqvidqpf
ilgvraidglltcgigqrigifagsgvgkstllgmicngasadiivlaligergrevnef
lallpqstlskcvlvvttsdrpalermkaaftattiaeyfrdqgknvllmmdsvtryara
ardvglasgepdvrggfppsvfsslpklleragpapkgsitaiytvllesdnvndpigde
vrsildghivltrelaeenhfpaidiglsasrvmhnvvtsehlraaaeckkliatyknve
llirigeytmgqdpeadkaiknrkliqnfiqqstkdissyektieslfkvva

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6njpB (B:)
gshmisehdsvlekypriqkvlnstvpalslnsstryegkiiniggtiikarlpkariga
fykiepsqrlaeviaidedevfllpfehvsgmycgqwlsyqgdefkirvgdallgrlidg
igrpmesnivapylpferslyaeppdpllrqvidqpfilgvraidglltcgigqrigifa
gsgvgkstllgmicngasadiivlaligergrevneflallpqstlskcvlvvttsdrpa
lermkaaftattiaeyfrdqgknvllmmdsvtryaraardvglasgepdvrggfppsvfs
slpklleragpapkgsitaiytvllesdnvndpigdevrsildghivltrelaeenhfpa
idiglsasrvmhnvvtsehlraaaeckkliatyknvellirigeytmgqdpeadkaiknr
kliqnfiqqstkdissyektieslfkvva

    Sequence, based on observed residues (ATOM records):
    >6njpB (B:)
egkiiniggtiikarlpkarigafykiepsqrlaeviaidedevfllpfehvsgmycgqw
lsyqgdefkirvgdallgrlidgigrpmesnivapylpferslyaeppdpllrqvidqpf
ilgvraidglltcgigqrigifagsgvgkstllgmicngasadiivlaligergrevnef
lallpqstlskcvlvvttsdrpalermkaaftattiaeyfrdqgknvllmmdsvtryara
ardvglasgepdvrggfppsvfsslpklleragpapkgsitaiytvllesdnvndpigde
vrsildghivltrelaeenhfpaidiglsasrvmhnvvtsehlraaaeckkliatyknve
llirigeytmgqdpeadkaiknrkliqnfiqqstkdissyektieslfkvva

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6njpC (C:)
gshmisehdsvlekypriqkvlnstvpalslnsstryegkiiniggtiikarlpkariga
fykiepsqrlaeviaidedevfllpfehvsgmycgqwlsyqgdefkirvgdallgrlidg
igrpmesnivapylpferslyaeppdpllrqvidqpfilgvraidglltcgigqrigifa
gsgvgkstllgmicngasadiivlaligergrevneflallpqstlskcvlvvttsdrpa
lermkaaftattiaeyfrdqgknvllmmdsvtryaraardvglasgepdvrggfppsvfs
slpklleragpapkgsitaiytvllesdnvndpigdevrsildghivltrelaeenhfpa
idiglsasrvmhnvvtsehlraaaeckkliatyknvellirigeytmgqdpeadkaiknr
kliqnfiqqstkdissyektieslfkvva

    Sequence, based on observed residues (ATOM records):
    >6njpC (C:)
egkiiniggtiikarlpkarigafykiepsqrlaeviaidedevfllpfehvsgmycgqw
lsyqgdefkirvgdallgrlidgigrpmesnivapylpferslyaeppdpllrqvidqpf
ilgvraidglltcgigqrigifagsgvgkstllgmicngasadiivlaligergrevnef
lallpqstlskcvlvvttsdrpalermkaaftattiaeyfrdqgknvllmmdsvtryara
ardvglasgepdvrggfppsvfsslpklleragpapkgsitaiytvllesdnvndpigde
vrsildghivltrelaeenhfpaidiglsasrvmhnvvtsehlraaaeckkliatyknve
llirigeytmgqdpeadkaiknrkliqnfiqqstkdissyektieslfkvva

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6njpD (D:)
gshmisehdsvlekypriqkvlnstvpalslnsstryegkiiniggtiikarlpkariga
fykiepsqrlaeviaidedevfllpfehvsgmycgqwlsyqgdefkirvgdallgrlidg
igrpmesnivapylpferslyaeppdpllrqvidqpfilgvraidglltcgigqrigifa
gsgvgkstllgmicngasadiivlaligergrevneflallpqstlskcvlvvttsdrpa
lermkaaftattiaeyfrdqgknvllmmdsvtryaraardvglasgepdvrggfppsvfs
slpklleragpapkgsitaiytvllesdnvndpigdevrsildghivltrelaeenhfpa
idiglsasrvmhnvvtsehlraaaeckkliatyknvellirigeytmgqdpeadkaiknr
kliqnfiqqstkdissyektieslfkvva

    Sequence, based on observed residues (ATOM records):
    >6njpD (D:)
yegkiiniggtiikarlpkarigafykiepsqrlaeviaidedevfllpfehvsgmycgq
wlsyqgdefkirvgdallgrlidgigrpmesnivapylpferslyaeppdpllrqvidqp
filgvraidglltcgigqrigifagsgvgkstllgmicngasadiivlaligergrevne
flallpqstlskcvlvvttsdrpalermkaaftattiaeyfrdqgknvllmmdsvtryar
aardvglasgepdvrggfppsvfsslpklleragpapkgsitaiytvllesdnvndpigd
evrsildghivltrelaeenhfpaidiglsasrvmhnvvtsehlraaaeckkliatyknv
ellirigeytmgqdpeadkaiknrkliqnfiqqstkdissyektieslfkvva

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6njpE (E:)
gshmisehdsvlekypriqkvlnstvpalslnsstryegkiiniggtiikarlpkariga
fykiepsqrlaeviaidedevfllpfehvsgmycgqwlsyqgdefkirvgdallgrlidg
igrpmesnivapylpferslyaeppdpllrqvidqpfilgvraidglltcgigqrigifa
gsgvgkstllgmicngasadiivlaligergrevneflallpqstlskcvlvvttsdrpa
lermkaaftattiaeyfrdqgknvllmmdsvtryaraardvglasgepdvrggfppsvfs
slpklleragpapkgsitaiytvllesdnvndpigdevrsildghivltrelaeenhfpa
idiglsasrvmhnvvtsehlraaaeckkliatyknvellirigeytmgqdpeadkaiknr
kliqnfiqqstkdissyektieslfkvva

    Sequence, based on observed residues (ATOM records):
    >6njpE (E:)
egkiiniggtiikarlpkarigafykiepsqrlaeviaidedevfllpfehvsgmycgqw
lsyqgdefkirvgdallgrlidgigrpmesnivapylpferslyaeppdpllrqvidqpf
ilgvraidglltcgigqrigifagsgvgkstllgmicngasadiivlaligergrevnef
lallpqstlskcvlvvttsdrpalermkaaftattiaeyfrdqgknvllmmdsvtryara
ardvglasgepdvrggfppsvfsslpklleragpapkgsitaiytvllesdnvndpigde
vrsildghivltrelaeenhfpaidiglsasrvmhnvvtsehlraaaeckkliatyknve
llirigeytmgqdpeadkaiknrkliqnfiqqstkdissyektieslfkvva

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6njpF (F:)
gshmisehdsvlekypriqkvlnstvpalslnsstryegkiiniggtiikarlpkariga
fykiepsqrlaeviaidedevfllpfehvsgmycgqwlsyqgdefkirvgdallgrlidg
igrpmesnivapylpferslyaeppdpllrqvidqpfilgvraidglltcgigqrigifa
gsgvgkstllgmicngasadiivlaligergrevneflallpqstlskcvlvvttsdrpa
lermkaaftattiaeyfrdqgknvllmmdsvtryaraardvglasgepdvrggfppsvfs
slpklleragpapkgsitaiytvllesdnvndpigdevrsildghivltrelaeenhfpa
idiglsasrvmhnvvtsehlraaaeckkliatyknvellirigeytmgqdpeadkaiknr
kliqnfiqqstkdissyektieslfkvva

    Sequence, based on observed residues (ATOM records):
    >6njpF (F:)
egkiiniggtiikarlpkarigafykiepsqrlaeviaidedevfllpfehvsgmycgqw
lsyqgdefkirvgdallgrlidgigrpmesnivapylpferslyaeppdpllrqvidqpf
ilgvraidglltcgigqrigifagsgvgkstllgmicngasadiivlaligergrevnef
lallpqstlskcvlvvttsdrpalermkaaftattiaeyfrdqgknvllmmdsvtryara
ardvglasgepdvrggfppsvfsslpklleragpapkgsitaiytvllpigdevrsildg
hivltrelaeenhfpaidiglsasrvmhnvvtsehlraaaeckkliatyknvellirige
ytmgqdpeadkaiknrkliqnfiqqstkdissyektieslfkvva

  • Chain 'G':
    Sequence, based on SEQRES records:
    >6njpG (G:)
gshmldrilsirksranrlresmakinsqikevdgklddceqsikesiaskqaycaslvn
ldkvslykyqiknnafdeqkqrlyekksslskekrslldsqkrtkenlqhvnksveklsf
aikehyfd

    Sequence, based on observed residues (ATOM records):
    >6njpG (G:)
hmldrilsirksranrlresmakinsqikevekrslldsqkrtkenlqhvnksveklsfa
ikeh