PDB entry 6nir

View 6nir on RCSB PDB site
Description: crystal structure of a gii.4 norovirus hov protease
Deposited on 2018-12-31, released 2019-01-23
The last revision was dated 2019-12-18, with a file datestamp of 2019-12-13.
Experiment type: XRAY
Resolution: 2.7 Å
R-factor: N/A
AEROSPACI score: 0.19 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: HOV protease
    Species: Norovirus [TaxId:142786]
    Database cross-references and differences (RAF-indexed):
    • PDB 6NIR
  • Chain 'B':
    Compound: HOV protease
    Species: Norovirus [TaxId:142786]
    Database cross-references and differences (RAF-indexed):
    • PDB 6NIR
  • Chain 'C':
    Compound: HOV protease
    Species: Norovirus [TaxId:142786]
    Database cross-references and differences (RAF-indexed):
    • PDB 6NIR
  • Chain 'D':
    Compound: HOV protease
    Species: Norovirus [TaxId:142786]
    Database cross-references and differences (RAF-indexed):
    • PDB 6NIR (0-End)
  • Chain 'X':
    Compound: HOV protease fragment
    Species: Norovirus [TaxId:142786]
    Database cross-references and differences (RAF-indexed):
    • PDB 6NIR (0-5)

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6nirA (A:)
gsappsiwsrivnfgsgwgfwvspslfitsthvipqgakeffgvpikqiqvhksgefcrl
rfpkpirtdvtgmileegapegtvvtllikrstgelmplaarmgthatmkiqgrtvggqm
gmlltgsnaksmdlgttpgdcgcpyiykrgndyvvigvhtaaarggntvicatqgsegea
tle

    Sequence, based on observed residues (ATOM records):
    >6nirA (A:)
siwsrivnfgsgwgfwvspslfitsthvipqgakeffgvpikqiqvhksgefcrlrfpkp
irtdvtgmileegapegtvvtllikrstgelmplaarmgthatmkiqgrtvggqmgmllt
gsnaksmdlgttpgdcgcpyiykrgndyvvigvhtaaarggntvicatq

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6nirB (B:)
gsappsiwsrivnfgsgwgfwvspslfitsthvipqgakeffgvpikqiqvhksgefcrl
rfpkpirtdvtgmileegapegtvvtllikrstgelmplaarmgthatmkiqgrtvggqm
gmlltgsnaksmdlgttpgdcgcpyiykrgndyvvigvhtaaarggntvicatqgsegea
tle

    Sequence, based on observed residues (ATOM records):
    >6nirB (B:)
siwsrivnfgsgwgfwvspslfitsthvipqgakeffgvpikqiqvhksgefcrlrfpkp
irtdvtgmileegapegtvvtllikrstgelmplaarmgthatmkiqgrtvggqmgmllt
gsnaksmdlgttpgdcgcpyiykrgndyvvigvhtaaarggntvicatqg

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6nirC (C:)
gsappsiwsrivnfgsgwgfwvspslfitsthvipqgakeffgvpikqiqvhksgefcrl
rfpkpirtdvtgmileegapegtvvtllikrstgelmplaarmgthatmkiqgrtvggqm
gmlltgsnaksmdlgttpgdcgcpyiykrgndyvvigvhtaaarggntvicatqgsegea
tle

    Sequence, based on observed residues (ATOM records):
    >6nirC (C:)
appsiwsrivnfgsgwgfwvspslfitsthvipqgakeffgvpikqiqvhksgefcrlrf
pkpirtdvtgmileegapegtvvtllikrstgelmplaarmgthatmkiqgrtvggqmgm
lltgsnaksmdlgttpgdcgcpyiykrgndyvvigvhtaaarggntvicatqgsegeatl

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6nirD (D:)
gsappsiwsrivnfgsgwgfwvspslfitsthvipqgakeffgvpikqiqvhksgefcrl
rfpkpirtdvtgmileegapegtvvtllikrstgelmplaarmgthatmkiqgrtvggqm
gmlltgsnaksmdlgttpgdcgcpyiykrgndyvvigvhtaaarggntvicatqgsegea
tle

    Sequence, based on observed residues (ATOM records):
    >6nirD (D:)
gsappsiwsrivnfgsgwgfwvspslfitsthvipqgakeffgvpikqiqvhksgefcrl
rfpkpirtdvtgmileegapegtvvtllikrstgelmplaarmgthatmkiqgrtvggqm
gmlltgsnaksmdlgttpgdcgcpyiykrgndyvvigvhtaaarggntvicatq

  • Chain 'X':
    Sequence; same for both SEQRES and ATOM records:
    >6nirX (X:)
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