PDB entry 6nd1

View 6nd1 on RCSB PDB site
Description: cryoem structure of the sec complex from yeast
Deposited on 2018-12-13, released 2019-01-09
The last revision was dated 2020-01-08, with a file datestamp of 2020-01-03.
Experiment type: EM
Resolution: 4.1 Å
R-factor: N/A
AEROSPACI score: 0.03 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Protein translocation protein SEC63
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Protein transport protein SEC61
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: protein transport protein sss1
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Protein transport protein SBH1
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Translocation protein SEC66
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Translocation protein SEC72
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6nd1A (A:)
mptnyeydeasetwpsfiltgllmvvgpmtllqiyqiffganaedgnsgkskefneevfk
nlneeytsdeikqfrrkfdknsnkkskiwsrrniiiivgwilvaillqrinsndaikdaa
tklfdpyeilgistsasdrdiksayrklsvkfhpdklakgltpdeksvmeetyvqitkay
esltdelvrqnylkyghpdgpqstshgialprflvdgsaspllvvcyvallglilpyfvs
rwwartqsytkkgihnvtasnfvsnlvnykpseivttdlilhwlsfahefkqffpdlqpt
dfekllqdhinrrdsgklnnakfrivakchsllhglldiacgfrnldialgaintfkciv
qavpltpncqilqlpnvdkehfitktgdihtlgklftledakigevlgikdqaklnetlr
vashipnlkiikadflvpgenqvtpsstpyislkvlvrsakqpliptslipeenltepqd
fesqrdpfammskqplvpysfapffptkrrgswcclvssqkdgkilqtpiiieklsyknl
nddkdffdkrikmdltkhekfdindweigtikiplgqpapetvgdfffrvivkstdyftt
dlditmnmkvrdspaveqvevyseeddeystdddetesddesdasdytdidtdteaedde
spegsggsgdykddddk

    Sequence, based on observed residues (ATOM records):
    >6nd1A (A:)
eydeasetwpsfiltgmtllqiyqefneevfknlneeytsdeikqfrrkfkiwsrrniii
ivgwilvaillqrinsspllvvcyvallglilpyfvsrwwartqsytkkgihnvtasnfv
snlvnykpseivttdlilhwlsfahefkqffpdlqptdfekllqdhinrrdsgklnnakf
rivakchsllhglldiacgfrnldialgaintfkcivqavpltpncqilqlpnvdkehfi
tktgdihtlgklftledakigevlgikdqaklnetlrvashipnlkiikadflvpgenqv
tpsstpyislkvlvrsakqpliptslipeenltepqdfesqrdpfammskqplvpysfap
ffptkrrgswcclvssqkdgkilqtpiiieklsyknlnddkdffdekfdindweigtiki
plgqpapetvgdfffrvivkstdyfttdlditmnmkvrdsp

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6nd1B (B:)
mssnrvldlfkpfesflpeviaperkvpynqkliwtgvslliflilgqiplygivssets
dplywlramlasnrgtllelgvspiitssmifqflqgtqllqirpeskqdrelfqiaqkv
caiililgqalvvvmtgnygapsdlglpiclllifqlmfaslivmlldellskgyglgsg
islftatniaeqifwrafapttvnsgrgkefegaviaffhllavrkdkkralveafyrtn
lpnmfqvlmtvaiflfvlylqgfryelpirstkvrgqigiypiklfytsntpimlqsalt
sniflisqilfqkyptnplirligvwgirpgtqgpqmalsglayyiqplmslsealldpi
ktivyitfvlgscavfsktwieisgtsprdiakqfkdqgmvingkretsiyrelkkiipt
aaafggatigalsvgsdllgtlgsgasilmatttiygyyeaaakeggftknlvpgfsdlm

    Sequence, based on observed residues (ATOM records):
    >6nd1B (B:)
eviaperkvpynqkliwtgvslliflilgqiplygietsdplywlramlasnrgtllelg
vspiitssmifqqiaqkvcaiililgqalvvvmtgndlglpiclllifqlmfaslivmll
dellskgyglgsgislftatniaeqifwrafapttvnsgrgkefegaviaffhllavkkr
alveafyrtnlpnmfqvlmtvaiflfvlylqgfryelpirstkvrgqigiypiklfytsn
tpimlqsaltsniflisqilfqkyptnpyyiqplmslsealldpiktivyitfvlgscav
fsktwieisgtsprdiakqfkdqgmvingkretsiyrelkkiiptaaafggatigalsvg
sdllgtlgsgasilmatttiygyyeaaake

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6nd1C (C:)
marasekgeekkqsnnqveklveapvefvregtqflakckkpdlkeytkivkavgigfia
vgiigyaiklihipiryviv

    Sequence, based on observed residues (ATOM records):
    >6nd1C (C:)
pvefvregtqflakckkpdlkeytkivkavgigfiavgiigyaiklihipiryviv

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6nd1D (D:)
mssptppggqrtlqkrkqgssqkvaasapkkntnsnnsilkiysdeatglrvdplvvlfl
avgfifsvvalhviskvagklf

    Sequence, based on observed residues (ATOM records):
    >6nd1D (D:)
nsilkiysdeatglrvdplvvlflavgfifsvvalhviskv

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6nd1E (E:)
msefnetkfsnngtffeteepivetksisvytpliyvfilvvslvmfassyrkkqakkis
eqpsifdendahdlyfqikemsenekihekvlkaallnrgaesvrrslklkelapqinll
ykngsigedywkrfetevklielefkdtlqeaerlqpgwvqlfvmvckeicfnqalsrry
qsilkrkevcikewelkinndgrlvn

    Sequence, based on observed residues (ATOM records):
    >6nd1E (E:)
svytpliyvfilvvslvmfassyrkkqakkiseqpsifdendahdlyfqikemvlkaall
nrgaesvrrslklkelapqinllykngsigedywkrfetevklielefkdtlqeaerlqp
gwvqlfvmvckeicfnqal

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6nd1F (F:)
mvtleynansklitasdavvalstetnidqinvlttsligetnpnftpqpnealskmikg
lfesgmknlqqkklnealknvslaiemaqrkrapweafaiqlpelhfmlrskidlclilg
khlealqdldfllgtgliqpdvfvrkadcllklrqweearatcerglalapedmklrall
ietarnlaeynge

    Sequence, based on observed residues (ATOM records):
    >6nd1F (F:)
qlpelhfmlrskidlclilgkhlealqdldfllgtgliqpdvfvrkadcllklrqweear
atcerglalapedmklrallietarnlaeyng