PDB entry 6n60

View 6n60 on RCSB PDB site
Description: escherichia coli rna polymerase sigma70-holoenzyme bound to upstream fork promoter dna and microcin j25 (mccj25)
Deposited on 2018-11-23, released 2019-01-09
The last revision was dated 2020-01-01, with a file datestamp of 2019-12-27.
Experiment type: XRAY
Resolution: 3.68 Å
R-factor: N/A
AEROSPACI score: 0.06 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA-directed RNA polymerase subunit alpha
    Species: Escherichia coli [TaxId:562]
    Gene: rpoA, pez, phs, sez, b3295, JW3257
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0A7Z4 (Start-233)
      • expression tag (234)
  • Chain 'B':
    Compound: DNA-directed RNA polymerase subunit alpha
    Species: Escherichia coli [TaxId:562]
    Gene: rpoA, pez, phs, sez, b3295, JW3257
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0A7Z4 (Start-233)
      • expression tag (234-236)
  • Chain 'C':
    Compound: DNA-directed RNA polymerase subunit beta
    Species: Escherichia coli [TaxId:562]
    Gene: rpoB, groN, nitB, rif, ron, stl, stv, tabD, b3987, JW3950
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: DNA-directed RNA polymerase subunit beta'
    Species: Escherichia coli [TaxId:562]
    Gene: rpoC, tabB, b3988, JW3951
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: DNA-directed RNA polymerase subunit omega
    Species: Escherichia coli [TaxId:562]
    Gene: rpoZ, b3649, JW3624
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: RNA polymerase sigma factor rpoD
    Species: Escherichia coli [TaxId:562]
    Gene: rpoD
    Database cross-references and differences (RAF-indexed):
  • Chain 'M':
    Compound: microcin J25
    Species: Escherichia coli [TaxId:562]
    Gene: MCJA
    Database cross-references and differences (RAF-indexed):
  • Chain 'N':
    Compound: non-template strand DNA
    Species: Escherichia coli, synthetic [TaxId:562]
  • Chain 'T':
    Compound: template strand DNA
    Species: Escherichia coli, synthetic [TaxId:562]
  • Heterogens: MG, ZN

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6n60A (A:)
    mqgsvteflkprlvdieqvssthakvtleplergfghtlgnalrrillssmpgcavteve
    idgvlheystkegvqedileillnlkglavrvqgkdeviltlnksgigpvtaadithdgd
    veivkpqhvichltdenasismrikvqrgrgyvpastrihseederpigrllvdacyspv
    eriaynveaarveqrtdldklviemetngtidpeeairraatilaeqleafvdlevlfq
    

    Sequence, based on observed residues (ATOM records):
    >6n60A (A:)
    vteflkprlvdieqvssthakvtleplergfghtlgnalrrillssmpgcavteveidgv
    lheystkegvqedileillnlkglavrvqgkdeviltlnksgigpvtaadithdgdveiv
    kpqhvichltdenasismrikvqrgrgyvpastrihseederpigrllvdacyspveria
    ynveaarveqrtdldklviemetngtidpeeairraatilaeqleafvdle
    

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6n60B (B:)
    mqgsvteflkprlvdieqvssthakvtleplergfghtlgnalrrillssmpgcavteve
    idgvlheystkegvqedileillnlkglavrvqgkdeviltlnksgigpvtaadithdgd
    veivkpqhvichltdenasismrikvqrgrgyvpastrihseederpigrllvdacyspv
    eriaynveaarveqrtdldklviemetngtidpeeairraatilaeqleafvdlevlfq
    

    Sequence, based on observed residues (ATOM records):
    >6n60B (B:)
    teflkprlvdieqvssthakvtleplergfghtlgnalrrillssmpgcavteveidgve
    ystkegvqedileillnlkglavrvqgkdeviltlnksgigpvtaadithdgdveivkpq
    hvichltdenasismrikvqrgrgyvpastrllvdacyspveriaynveaarveqrtdld
    klviemetngtidpeeairraatilaeqleafvdlevl
    

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6n60C (C:)
    mvysytekkrirkdfgkrpqvldvpyllsiqldsfqkfieqdpegqygleaafrsvfpiq
    sysgnselqyvsyrlgepvfdvqecqirgvtysaplrvklrlviyereapegtvkdikeq
    evymgeiplmtdngtfvingtervivsqlhrspgvffdsdkgkthssgkvlynariipyr
    gswldfefdpkdnlfvridrrrklpatiilralnytteqildlffekvifeirdnklqme
    lvperlrgetasfdieangkvyvekgrritarhirqlekddvklievpveyiagkvvakd
    yidestgelicaanmelsldllaklsqsghkrietlftndldhgpyisetlrvdptndrl
    salveiyrmmrpgepptreaaeslfenlffsedrydlsavgrmkfnrsllreeiegsgil
    skddiidvmkklidirngkgevddidhlgnrrirsvgemaenqfrvglvrveravkerls
    lgdldtlmpqdminakpisaavkeffgssqlsqfmdqnnplseithkrrisalgpggltr
    eragfevrdvhpthygrvcpietpegpniglinslsvyaqtneygfletpyrkvtdgvvt
    deihylsaieegnyviaqansnldeeghfvedlvtcrskgesslfsrdqvdymdvstqqv
    vsvgaslipflehddanralmganmqrqavptlradkplvgtgmeravavdsgvtavakr
    ggvvqyvdasrivikvnedemypgeagidiynltkytrsnqntcinqmpcvslgepverg
    dvladgpstdlgelalgqnmrvafmpwngynfedsilvservvqedrfttihiqelacvs
    rdtklgpeeitadipnvgeaalskldesgivyigaevtggdilvgkvtpkgetqltpeek
    llraifgekasdvkdsslrvpngvsgtvidvqvftrdgvekdkraleieemqlkqakkdl
    seelqileaglfsriravlvaggveaekldklprdrwlelgltdeekqnqleqlaeqyde
    lkhefekkleakrrkitqgddlapgvlkivkvylavkrriqpgdkmagrhgnkgviskin
    piedmpydengtpvdivlnplgvpsrmnigqilethlgmaakgigdkinamlkqqqevak
    lrefiqraydlgadvrqkvdlstfsdeevmrlaenlrkgmpiatpvfdgakeaeikellk
    lgdlptsgqirlydgrtgeqferpvtvgymymlklnhlvddkmharstgsyslvtqqplg
    gkaqfggqrfgemevwaleaygaaytlqemltvksddvngrtkmyknivdgnhqmepgmp
    esfnvllkeirslginielede
    

    Sequence, based on observed residues (ATOM records):
    >6n60C (C:)
    ysytekkrirkdfgkrpqvldvpyllsiqldsfqkfieqdpegqygleaafrsvfpiqsy
    sgnselqyvsyrlgepvfdvqecqirgvtysaplrvklrlviyergtvkdikeqevymge
    iplmtdngtfvingtervivsqlhrspgvffdsdkgkthssgkvlynariipyrgswldf
    efdpkdnlfvridrrrklpatiilralnytteqildlffekvifeirdnklqmelvperl
    rgetasfdieangkvyvekgrritarhirqlekddvklievpveyiagkvvakdyidest
    gelicaanmelsldllaklsqsghkrietlftndldhgpyisetlrvdptndrlsalvei
    yrmmrpgepptreaaeslfenlffsedrydlsavgrmkfnrsllreeiegsgilskddii
    dvmkklidirngkgevddidhlgnrrirsvgemaenqfrvglvrveravkerlslgdldt
    lmpqdminakpisaavkeffgssqlsqfmdqnnplseithkrrisalgpggltreragfe
    vrdvhpthygrvcpietpegpniglinslsvyaqtneygfletpyrkvtdgvvtdeihyl
    saieegnyviaqansnldeeghfvedlvtcrskgesslfsrdqvdymdvstqqvvsvgas
    lipflehddanralmganmqrqavptlradkplvgtgmeravavdsgvtavakrggvvqy
    vdasrivikvnedemypgeagidiynltkytrsnqntcinqmpcvslgepvergdvladg
    pstdlgelalgqnmrvafmpwngynfedsilvservvqedrfttihiqelacvsrdtklg
    peeitadipnvgeaalskldesgivyigaevtggdilvgkvtpkgetqltpeekllraif
    gekasdvkdsslrvpngvsgtvidvqvftrdgvekdkraleieemqlkqakkdlseelqi
    leaglfsriravlvaggveaekldklprdrwlelgltdeekqnqleqlaeqydelkhefe
    kkleakrrkitqgddlapgvlkivkvylavkrriqpgdkmagrhgnkgviskinpiedmp
    ydengtpvdivlnplgvpsrmnigqilethlgmaakgigdkinamlkqqqevaklrefiq
    raydlgadvrqkvdlstfsdeevmrlaenlrkgmpiatpvfdgakeaeikellklgdlpt
    sgqirlydgrtgeqferpvtvgymymlklnhlvddkmharstgsyslvtqqplggaqfgg
    qrfgemevwaleaygaaytlqemltvksddvngrtkmyknivdgnhqmepgmpesfnvll
    keirslginielede
    

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6n60D (D:)
    vkdllkflkaqtkteefdaikialaspdmirswsfgevkkpetinyrtfkperdglfcar
    ifgpvkdyeclcgkykrlkhrgvicekcgvevtqtkvrrermghielasptahiwflksl
    psrigllldmplrdiervlyfesyvvieggmtnlerqqilteeqyldaleefgdefdakm
    gaeaiqallksmdleqeceqlreelnetnsetkrkkltkriklleafvqsgnkpewmilt
    vlpvlppdlrplvpldggrfatsdlndlyrrvinrnnrlkrlldlaapdiivrnekrmlq
    eavdalldngrrgraitgsnkrplksladmikgkqgrfrqnllgkrvdysgrsvitvgpy
    lrlhqcglpkkmalelfkpfiygklelrglattikaakkmvereeavvwdildevirehp
    vllnraptlhrlgiqafepvliegkaiqlhplvcaaynadfdgdqmavhvpltleaqlea
    ralmmstnnilspangepiivpsqdvvlglyymtrdcvnakgegmvltgpkeaerlyrsg
    laslharvkvriteyekdangelvaktslkdttvgrailwmivpkglpysivnqalgkka
    iskmlntcyrilglkptvifadqimytgfayaarsgasvgiddmvipekkheiiseaeae
    vaeiqeqfqsglvtagerynkvidiwaaandrvskammdnlqtetvinrdgqeekqvsfn
    siymmadsgargsaaqirqlagmrglmakpdgsiietpitanfreglnvlqyfisthgar
    kgladtalktansgyltrrlvdvaqdlvvteddcgthegimmtpvieggdvkeplrdrvl
    grvtaedvlkpgtadilvprntllheqwcdlleensvdavkvrsvvscdtdfgvcahcyg
    rdlarghiinkgeaigviaaqsigepgtqltmrtfhiggaasraaaessiqvknkgsikl
    snvksvvnssgklvitsrntelklidefgrtkesykvpygavlakgdgeqvaggetvanw
    dphtmpvitevsgfvrftdmidgqtitrqtdeltglsslvvldsaertaggkdlrpalki
    vdaqgndvlipgtdmpaqyflpgkaivqledgvqissgdtlaripqesggtkditgglpr
    vadlfearrpkepailaeisgivsfgketkgkrrlvitpvdgsdpyeemipkwrqlnvfe
    gervergdvisdgpeaphdilrlrgvhavtryivnevqdvyrlqgvkindkhievivrqm
    lrkativnagssdflegeqveysrvkianreleangkvgatysrdllgitkaslatesfi
    saasfqettrvlteaavagkrdelrglkenvivgrlipagtgyayhqdrmrrraageapa
    apqvtaedasaslaellnaglggsdnele
    

    Sequence, based on observed residues (ATOM records):
    >6n60D (D:)
    efdaikialaspdmirswsfgevkkpetinyrtfkperdglfcarifgpvkdyeclcgky
    krlkhrgvicekcgvevtqtkvrrermghielasptahiwflkslpsrigllldmplrdi
    ervlyfesyvvieggmtnlerqqilteeqyldaleefgdefdakmgaeaiqallksmdle
    qeceqlreelnetnsetkrkkltkriklleafvqsgnkpewmiltvlpvlppdlrplvpl
    dggrfatsdlndlyrrvinrnnrlkrlldlaapdiivrnekrmlqeavdalldngrrgra
    itgsnkrplksladmikgkqgrfrqnllgkrvdysgrsvitvgpylrlhqcglpkkmale
    lfkpfiygklelrglattikaakkmvereeavvwdildevirehpvllnraptlhrlgiq
    afepvliegkaiqlhplvcaaynadfdgdqmavhvpltleaqlearalmmstnnilspan
    gepiivpsqdvvlglyymtrdcvnakgegmvltgpkeaerlyrsglaslharvkvritey
    ekdangelvaktslkdttvgrailwmivpkglpysivnqalgkkaiskmlntcyrilglk
    ptvifadqimytgfayaarsgasvgiddmvipekkheiiseaeaevaeiqeqfqsglvta
    gerynkvidiwaaandrvskammdnlqtetvinrdgqeekqvsfnsiymmadsgargsaa
    qirqlagmrglmakpdgsiietpitanfreglnvlqyfisthgarkgladtalktansgy
    ltrrlvdvaqdlvvteddcgthegimmtpvieggdvkeplrdrvlgrvtaedvlkpgtad
    ilvprntllheqwcdlleensvdavkvrsvvscdtdfgvcahcygrdlarghiinkgeai
    gviaaqsigepgtqltmrtfhissiqvknkgsiklsnvksvvnssgklvitsrntelkli
    defgrtkesykvpygavlakgdgeqvaggetvanwdphtgglprvadlfearrpkepail
    aeisgivsfgketkgkrrlvitpvdgsdpyeemipkwrqlnvfegervergdvisdgpea
    phdilrlrgvhavtryivnevqdvyrlqgvkindkhievivrqmlrkativnagssdfle
    geqveysrvkianreleangkvgatysrdllgitkaslatesfisaasfqettrvlteaa
    vagkrdelrglkenvivgrlipagtgyayhqdrmrr
    

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6n60E (E:)
    marvtvqdavekignrfdlvlvaarrarqmqvggkdplvpeendkttvialreieeglin
    nqildvrerqeqqeqeaaelqavtaiaegrr
    

    Sequence, based on observed residues (ATOM records):
    >6n60E (E:)
    arvtvqdavekignrfdlvlvaarrarqmqvggkdplvpeendkttvialreieeglinn
    qildvrerqeqqeqeaael
    

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6n60F (F:)
    meqnpqsqlkllvtrgkeqgyltyaevndhlpedivdsdqiediiqmindmgiqvmeeap
    daddlmlaentadedaaeaaaqvlssveseigrttdpvrmymremgtvelltregeidia
    kriedginqvqcsvaeypeaitylleqynrveaeearlsdlitgfvdpnaeedlaptath
    vgselsqedldddededeedgdddsadddnsidpelarekfaelraqyvvtrdtikakgr
    shataqeeilklsevfkqfrlvpkqfdyvnsmrvmmdrvrtqerlimklcveqckmpkkn
    fitlftgnetsdtwfnaaiamnkpwseklhdvseevhralqklqqieeetgltieqvkdi
    nrrmsigeakarrakkemveanlrlvisiakkytnrglqfldliqegniglmkavdkfey
    rrgykfstyatwwirqaitrsiadqartiripvhmietinklnrisrqmlqemgreptpe
    elaermlmpedkirkvlkiakepismetpigddedshlgdfiedttlelpldsatteslr
    aathdvlagltareakvlrmrfgidmntdytleevgkqfdvtrerirqieakalrklrhp
    srsevlrsfldd
    

    Sequence, based on observed residues (ATOM records):
    >6n60F (F:)
    ttdpvrmymremgtvelltregeidiakriedginqvqcsvaeypeaitylpkqfdyvns
    mtieqvkdinrrmsigeakarrakkemveanlrlvisiakkytnrglqfldliqegnigl
    mkavdkfeyrrgykfstyatwwirqaitrsiadqartiripvhmietinklnrisrqmlq
    emgreptpeelaermlmpedkirkvlkiakepismetpigddedshlgdfiedttlelpl
    dsatteslraathdvlagltareakvlrmrfgidmntdytleevgkqfdvtrerirqiea
    kalrklrhpsrsevlrsf
    

  • Chain 'M':
    Sequence; same for both SEQRES and ATOM records:
    >6n60M (M:)
    ggaghvpeyfvgigtpisfyg
    

  • Chain 'N':
    No sequence available.

  • Chain 'T':
    No sequence available.