PDB entry 6n58

View 6n58 on RCSB PDB site
Description: cryo-em structure of escherichia coli rnap polymerase bound with trar in conformation ii
Deposited on 2018-11-21, released 2020-02-26
The last revision was dated 2020-02-26, with a file datestamp of 2020-02-21.
Experiment type: EM
Resolution: 3.78 Å
R-factor: N/A
AEROSPACI score: 0.07 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'G':
    Compound: DNA-directed RNA polymerase subunit alpha
    Species: Escherichia coli [TaxId:562]
    Gene: rpoA, pez, phs, sez, b3295, JW3257
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: DNA-directed RNA polymerase subunit alpha
    Species: Escherichia coli [TaxId:562]
    Gene: rpoA, pez, phs, sez, b3295, JW3257
    Database cross-references and differences (RAF-indexed):
  • Chain 'I':
    Compound: DNA-directed RNA polymerase subunit beta
    Species: Escherichia coli [TaxId:562]
    Gene: rpoB, groN, nitB, rif, ron, stl, stv, tabD, b3987, JW3950
    Database cross-references and differences (RAF-indexed):
  • Chain 'J':
    Compound: DNA-directed RNA polymerase subunit beta'
    Species: Escherichia coli [TaxId:562]
    Gene: rpoC, tabB, b3988, JW3951
    Database cross-references and differences (RAF-indexed):
  • Chain 'K':
    Compound: DNA-directed RNA polymerase subunit omega
    Species: Escherichia coli [TaxId:562]
    Gene: rpoZ, b3649, JW3624
    Database cross-references and differences (RAF-indexed):
  • Chain 'L':
    Compound: RNA polymerase sigma factor rpoD
    Species: Escherichia coli [TaxId:562]
    Gene: rpoD
    Database cross-references and differences (RAF-indexed):
  • Chain 'M':
    Compound: Protein TraR
    Species: Escherichia coli [TaxId:562]
    Gene: traR, ECOK12F083
    Database cross-references and differences (RAF-indexed):
  • Heterogens: 1N7, MG, ZN

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'G':
    Sequence, based on SEQRES records:
    >6n58G (G:)
    mqgsvteflkprlvdieqvssthakvtleplergfghtlgnalrrillssmpgcavteve
    idgvlheystkegvqedileillnlkglavrvqgkdeviltlnksgigpvtaadithdgd
    veivkpqhvichltdenasismrikvqrgrgyvpastrihseederpigrllvdacyspv
    eriaynveaarveqrtdldklviemetngtidpeeairraatilaeqleafvdlrdvrqp
    evkeekpefdpillrpvddleltvrsanclkaeaihyigdlvqrtevellktpnlgkksl
    teikdvlasrglslgmrlenwppasiade
    

    Sequence, based on observed residues (ATOM records):
    >6n58G (G:)
    flkprlvdieqvssthakvtleplergfghtlgnalrrillssmpgcavteveidgvlhe
    ystkegvqedileillnlkglavrvqgkdeviltlnksgigpvtaadithdgdveivkpq
    hvichltdenasismrikvqrgrgyvpastrihseederpigrllvdacyspveriaynv
    eaarveqrtdldklviemetngtidpeeairraatilaeqleafvdlr
    

  • Chain 'H':
    Sequence, based on SEQRES records:
    >6n58H (H:)
    mqgsvteflkprlvdieqvssthakvtleplergfghtlgnalrrillssmpgcavteve
    idgvlheystkegvqedileillnlkglavrvqgkdeviltlnksgigpvtaadithdgd
    veivkpqhvichltdenasismrikvqrgrgyvpastrihseederpigrllvdacyspv
    eriaynveaarveqrtdldklviemetngtidpeeairraatilaeqleafvdlrdvrqp
    evkeekpefdpillrpvddleltvrsanclkaeaihyigdlvqrtevellktpnlgkksl
    teikdvlasrglslgmrlenwppasiade
    

    Sequence, based on observed residues (ATOM records):
    >6n58H (H:)
    svteflkprlvdieqvssthakvtleplergfghtlgnalrrillssmpgcavteveidg
    vlheystkegvqedileillnlkglavrvqgkdeviltlnksgigpvtaadithdgdvei
    vkpqhvichltdenasismrikvqrgrgyvpastrllvdacyspveriaynveaarveqr
    tdldklviemetngtidpeeairraatilaeqleafvdl
    

  • Chain 'I':
    Sequence, based on SEQRES records:
    >6n58I (I:)
    mvysytekkrirkdfgkrpqvldvpyllsiqldsfqkfieqdpegqygleaafrsvfpiq
    sysgnselqyvsyrlgepvfdvqecqirgvtysaplrvklrlviyereapegtvkdikeq
    evymgeiplmtdngtfvingtervivsqlhrspgvffdsdkgkthssgkvlynariipyr
    gswldfefdpkdnlfvridrrrklpatiilralnytteqildlffekvifeirdnklqme
    lvperlrgetasfdieangkvyvekgrritarhirqlekddvklievpveyiagkvvakd
    yidestgelicaanmelsldllaklsqsghkrietlftndldhgpyisetlrvdptndrl
    salveiyrmmrpgepptreaaeslfenlffsedrydlsavgrmkfnrsllreeiegsgil
    skddiidvmkklidirngkgevddidhlgnrrirsvgemaenqfrvglvrveravkerls
    lgdldtlmpqdminakpisaavkeffgssqlsqfmdqnnplseithkrrisalgpggltr
    eragfevrdvhpthygrvcpietpegpniglinslsvyaqtneygfletpyrkvtdgvvt
    deihylsaieegnyviaqansnldeeghfvedlvtcrskgesslfsrdqvdymdvstqqv
    vsvgaslipflehddanralmganmqrqavptlradkplvgtgmeravavdsgvtavakr
    ggvvqyvdasrivikvnedemypgeagidiynltkytrsnqntcinqmpcvslgepverg
    dvladgpstdlgelalgqnmrvafmpwngynfedsilvservvqedrfttihiqelacvs
    rdtklgpeeitadipnvgeaalskldesgivyigaevtggdilvgkvtpkgetqltpeek
    llraifgekasdvkdsslrvpngvsgtvidvqvftrdgvekdkraleieemqlkqakkdl
    seelqileaglfsriravlvaggveaekldklprdrwlelgltdeekqnqleqlaeqyde
    lkhefekkleakrrkitqgddlapgvlkivkvylavkrriqpgdkmagrhgnkgviskin
    piedmpydengtpvdivlnplgvpsrmnigqilethlgmaakgigdkinamlkqqqevak
    lrefiqraydlgadvrqkvdlstfsdeevmrlaenlrkgmpiatpvfdgakeaeikellk
    lgdlptsgqirlydgrtgeqferpvtvgymymlklnhlvddkmharstgsyslvtqqplg
    gkaqfggqrfgemevwaleaygaaytlqemltvksddvngrtkmyknivdgnhqmepgmp
    esfnvllkeirslginielede
    

    Sequence, based on observed residues (ATOM records):
    >6n58I (I:)
    vysytekkrirkdfgkrpqvldvpyllsiqldsfqkfieqdpegqygleaafrsvfpiqs
    ysgnselqyvsyrlgepvfdvqecqirgvtysaplrvklrlviyereapegtvkdikeqe
    vymgeiplmtdngtfvingtervivsqlhrspgvffdsdkgkthssgkvlynariipyrg
    swldfefdpkdnlfvridrrrklpatiilralnytteqildlffekvifeirdnklqmel
    vperlrgetasfdieangkvyvekgrritarhirqlekddvklievpveyiagkvvakdy
    idestgelicaanmelsldllaklsqsghkrietlftndldhgpyisetlrvdptndrls
    alveiyrmmrpgepptreaaeslfenlffsedrydlsavgrmkfnrsllreeiegsgils
    kddiidvmkklidirngkgevddidhlgnrrirsvgemaenqfrvglvrveravkerlsl
    gdldtlmpqdminakpisaavkeffgssqlsqfmdqnnplseithkrrisalgpggltre
    ragfevrdvhpthygrvcpietpegpniglinslsvyaqtneygfletpyrkvtdgvvtd
    eihylsaieegnyviaqansnldeeghfvedlvtcrskgesslfsrdqvdymdvstqqvv
    svgaslipflehddanralmganmqrqavptlradkplvgtgmeravavdsgvtavakrg
    gvvqyvdasrivikvnedemypgeagidiynltkytrsnqntcinqmpcvslgepvergd
    vladgpstdlgelalgqnmrvafmpwngynfedsilvservvqedrfttihiqelacvsr
    dtklgpeeitadipnvgeaalskldesgivyigaevtggdilvgkvtpkgetqltpeekl
    lraifgekasdvkdsslrvpngvsgtvidvqvftrdgvekdkraleieemqlkqakkdls
    eelqileaglfsriravlvaggveaekldklprdrwlelgltdeekqnqleqlaeqydel
    khefekkleakrrkitqgddlapgvlkivkvylavkrriqpgdkmagrhgnkgviskinp
    iedmpydengtpvdivlnplgvpsrmnigqilethlgmaakgigdkinamlkqqqevakl
    refiqraydlgadvrqkvdlstfsdeevmrlaenlrkgmpiatpvfdgakeaeikellkl
    gdlptsgqirlydgrtgeqferpvtvgymymlklnhlvddkmharstgsyslvtqqplgg
    kaqfggqrfgemevwaleaygaaytlqemltvksddvngrtkmyknivdgnhqmepgmpe
    sfnvllkeirslginielede
    

  • Chain 'J':
    Sequence, based on SEQRES records:
    >6n58J (J:)
    vkdllkflkaqtkteefdaikialaspdmirswsfgevkkpetinyrtfkperdglfcar
    ifgpvkdyeclcgkykrlkhrgvicekcgvevtqtkvrrermghielasptahiwflksl
    psrigllldmplrdiervlyfesyvvieggmtnlerqqilteeqyldaleefgdefdakm
    gaeaiqallksmdleqeceqlreelnetnsetkrkkltkriklleafvqsgnkpewmilt
    vlpvlppdlrplvpldggrfatsdlndlyrrvinrnnrlkrlldlaapdiivrnekrmlq
    eavdalldngrrgraitgsnkrplksladmikgkqgrfrqnllgkrvdysgrsvitvgpy
    lrlhqcglpkkmalelfkpfiygklelrglattikaakkmvereeavvwdildevirehp
    vllnraptlhrlgiqafepvliegkaiqlhplvcaaynadfdgdqmavhvpltleaqlea
    ralmmstnnilspangepiivpsqdvvlglyymtrdcvnakgegmvltgpkeaerlyrsg
    laslharvkvriteyekdangelvaktslkdttvgrailwmivpkglpysivnqalgkka
    iskmlntcyrilglkptvifadqimytgfayaarsgasvgiddmvipekkheiiseaeae
    vaeiqeqfqsglvtagerynkvidiwaaandrvskammdnlqtetvinrdgqeekqvsfn
    siymmadsgargsaaqirqlagmrglmakpdgsiietpitanfreglnvlqyfisthgar
    kgladtalktansgyltrrlvdvaqdlvvteddcgthegimmtpvieggdvkeplrdrvl
    grvtaedvlkpgtadilvprntllheqwcdlleensvdavkvrsvvscdtdfgvcahcyg
    rdlarghiinkgeaigviaaqsigepgtqltmrtfhiggaasraaaessiqvknkgsikl
    snvksvvnssgklvitsrntelklidefgrtkesykvpygavlakgdgeqvaggetvanw
    dphtmpvitevsgfvrftdmidgqtitrqtdeltglsslvvldsaertaggkdlrpalki
    vdaqgndvlipgtdmpaqyflpgkaivqledgvqissgdtlaripqesggtkditgglpr
    vadlfearrpkepailaeisgivsfgketkgkrrlvitpvdgsdpyeemipkwrqlnvfe
    gervergdvisdgpeaphdilrlrgvhavtryivnevqdvyrlqgvkindkhievivrqm
    lrkativnagssdflegeqveysrvkianreleangkvgatysrdllgitkaslatesfi
    saasfqettrvlteaavagkrdelrglkenvivgrlipagtgyayhqdrmrrraageapa
    apqvtaedasaslaellnaglggsdnelelevlfqgpssghhhhhhhhhh
    

    Sequence, based on observed residues (ATOM records):
    >6n58J (J:)
    eefdaikialaspdmirswsfgevkkpetinyrtfkperdglfcarifgpvkdyeclcgk
    ykrlkhrgvicekcgvevtqtkvrrermghielasptahiwflkslpsrigllldmplrd
    iervlyfesyvvieggmtnlerqqilteeqyldaleefgdefdakmgaeaiqallksmdl
    eqeceqlreelnetnsetkrkkltkriklleafvqsgnkpewmiltvlpvlppdlrplvp
    ldggrfatsdlndlyrrvinrnnrlkrlldlaapdiivrnekrmlqeavdalldngrrgr
    aitgsnkrplksladmikgkqgrfrqnllgkrvdysgrsvitvgpylrlhqcglpkkmal
    elfkpfiygklelrglattikaakkmvereeavvwdildevirehpvllnraptlhrlgi
    qafepvliegkaiqlhplvcaaynadfdgdqmavhvpltleaqlearalmmstnnilspa
    ngepiivpsqdvvlglyymtrdcvnakgegmvltgpkeaerlyrsglaslharvkvrite
    yekdangelvaktslkdttvgrailwmivpkglpysivnqalgkkaiskmlntcyrilgl
    kptvifadqimytgfayaarsgasvgiddmvipekkheiiseaeaevaeiqeqfqsglvt
    agerynkvidiwaaandrvskammdnlqtetvinrdgqeekqvsfnsiymmadsgargsa
    aqirqlagmrglmakpdgsiietpitanfreglnvlqyfisthgarkgladtalktansg
    yltrrlvdvaqdlvvteddcgthegimmtpvieggdvkeplrdrvlgrvtaedvlkpgta
    dilvprntllheqwcdlleensvdavkvrsvvscdtdfgvcahcygrdlarghiinkgea
    igviaaqsigepgtqltmrtfhigssiqvknkgsiklsnvksvvnssgklvitsrntelk
    lidefgrtkesykvpygavlakgdgeqvaggetvanwdphtmpvitevsgfvrftdmidg
    qtitrqtdeltglsslvvldsaertaggkdlrpalkivdaqgndvlipgtdmpaqyflpg
    kaivqledgvqissgdtlaripqkditgglprvadlfearrpkepailaeisgivsfgke
    tkgkrrlvitpvdgsdpyeemipkwrqlnvfegervergdvisdgpeaphdilrlrgvha
    vtryivnevqdvyrlqgvkindkhievivrqmlrkativnagssdflegeqveysrvkia
    nreleangkvgatysrdllgitkaslatesfisaasfqettrvlteaavagkrdelrglk
    envivgrlipagtgyayhqdrmrrraa
    

  • Chain 'K':
    Sequence, based on SEQRES records:
    >6n58K (K:)
    marvtvqdavekignrfdlvlvaarrarqmqvggkdplvpeendkttvialreieeglin
    nqildvrerqeqqeqeaaelqavtaiaegrr
    

    Sequence, based on observed residues (ATOM records):
    >6n58K (K:)
    arvtvqdavekignrfdlvlvaarrarqmqvggkdplvpeendkttvialreieeglinn
    qildvrerqeqqeqeaael
    

  • Chain 'L':
    Sequence, based on SEQRES records:
    >6n58L (L:)
    sefmeqnpqsqlkllvtrgkeqgyltyaevndhlpedivdsdqiediiqmindmgiqvme
    eapdaddlmlaentadedaaeaaaqvlssveseigrttdpvrmymremgtvelltregei
    diakriedginqvqcsvaeypeaitylleqydrveaeearlsdlitgfvdpnaeedlapt
    athvgselsqedldddededeedgdddsadddnsidpelarekfaelraqyvvtrdtika
    kgrshataqeeilklsevfkqfrlvpkqfdylvnsmrvmmdrvrtqerlimklcveqckm
    pkknfitlftgnetsdtwfnaaiamnkpwseklhdvseevhralqklqqieeetgltieq
    vkdinrrmsigeakarrakkemveanlrlvisiakkytnrglqfldliqegniglmkavd
    kfeyrrgykfstyatwwirqaitrsiadqartiripvhmietinklnrisrqmlqemgre
    ptpeelaermlmpedkirkvlkiakepismetpigddedshlgdfiedttlelpldsatt
    eslraathdvlagltareakvlrmrfgidmntdytleevgkqfdvtrerirqieakalrk
    lrhpsrsevlrsfldd
    

    Sequence, based on observed residues (ATOM records):
    >6n58L (L:)
    sqlkllvtrgkeqgyltyaevndhlpedivdsdqiediiqmindmgiqvmeeapdntade
    daaeaaaqvlssveseigrttdpvrmymremgtvelltregeidiakriedginqvqcsv
    aeypeaitylleqydrveaeearlsdlitgfvdpelarekfaelraqyvvtrdtihataq
    eeilklsevfkqfrlvpkqfdylvnsmrvmmdrvrtqerlimklcveqckmpkknfitlf
    tgnetsdtwfnaaiamnkpwseklhdvseevhralqklqqieeetgltieqvkdinrrms
    igeakarrakkemveanlrlvisiakkytnrglqfldliqegniglmkavdkfeyrrgyk
    fstyatwwirqaitrsiadqartiripvhmietinklnrisrqmlqemgreptpeelaer
    mlmpedkirkvlkiakepismetpigddedshlgdfiedttlelpldsatteslraathd
    vlagltareakvlrmrfgidmntdytleevgkqfdvtrerirqieakalrklrhpsrsev
    lrsfldd
    

  • Chain 'M':
    Sequence; same for both SEQRES and ATOM records:
    >6n58M (M:)
    sdeadeaysvteqltmtginrirqkinahgipvylceacgnpipearrkifpgvtlcvec
    qayqerqrkhya