PDB entry 6n3q

View 6n3q on RCSB PDB site
Description: cryo-em structure of the yeast sec complex
Deposited on 2018-11-16, released 2018-12-19
The last revision was dated 2019-12-18, with a file datestamp of 2019-12-13.
Experiment type: EM
Resolution: 3.68 Å
R-factor: N/A
AEROSPACI score: 0.08 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Protein transport protein SEC61
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Protein transport protein SBH1
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: protein transport protein sss1
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Protein translocation protein SEC63
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Translocation protein SEC66
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Translocation protein SEC72
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Database cross-references and differences (RAF-indexed):

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6n3qA (A:)
mssnrvldlfkpfesflpeviaperkvpynqkliwtgvslliflilgqiplygivssets
dplywlramlasnrgtllelgvspiitssmifqflqgtqllqirpeskqdrelfqiaqkv
caiililgqalvvvmtgnygapsdlglpiclllifqlmfaslivmlldellskgyglgsg
islftatniaeqifwrafapttvnsgrgkefegaviaffhllavrkdkkralveafyrtn
lpnmfqvlmtvaiflfvlylqgfryelpirstkvrgqigiypiklfytsntpimlqsalt
sniflisqilfqkyptnplirligvwgirpgtqgpqmalsglayyiqplmslsealldpi
ktivyitfvlgscavfsktwieisgtsprdiakqfkdqgmvingkretsiyrelkkiipt
aaafggatigalsvgsdllgtlgsgasilmatttiygyyeaaakeggftknlvpgfsdlm

    Sequence, based on observed residues (ATOM records):
    >6n3qA (A:)
fkpfesflpeviaperkvpynqkliwtgvslliflilgqiplygivssnrgtllelgvsp
iitssmifqflqgtqllqirpeskqdrelfqiaqkvcaiililgqalvvvmtgnygaplp
iclllifqlmfaslivmlldellskgyglgsgislftatniaeqifwrafapttvnsgrg
kefegaviaffhllavrkdkkralveafyrtnlpnmfqvlmtvaiflfvlylqgfryelp
irstkvrgqigiypiklfytsntpimlqsaltsniflisqiliktivyitfvlgscavfs
ktwieisgtsprdiakqfkdqgmvingkretsiyrelkkiiptaaafggatigalsvgsd
llgtlgsgasilmatttiygyyeaaakeggf

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6n3qB (B:)
mssptppggqrtlqkrkqgssqkvaasapkkntnsnnsilkiysdeatglrvdplvvlfl
avgfifsvvalhviskvagklf

    Sequence, based on observed residues (ATOM records):
    >6n3qB (B:)
rvdplvvlflavgfifsvvalhviskvagklf

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6n3qC (C:)
marasekgeekkqsnnqveklveapvefvregtqflakckkpdlkeytkivkavgigfia
vgiigyaiklihipiryviv

    Sequence, based on observed residues (ATOM records):
    >6n3qC (C:)
vefvregtqflakckkpdlkeytkivkavgigfiavgiigyaiklihipiryviv

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6n3qD (D:)
mptnyeydeasetwpsfiltgllmvvgpmtllqiyqiffganaedgnsgkskefneevfk
nlneeytsdeikqfrrkfdknsnkkskiwsrrniiiivgwilvaillqrinsndaikdaa
tklfdpyeilgistsasdrdiksayrklsvkfhpdklakgltpdeksvmeetyvqitkay
esltdelvrqnylkyghpdgpqstshgialprflvdgsaspllvvcyvallglilpyfvs
rwwartqsytkkgihnvtasnfvsnlvnykpseivttdlilhwlsfahefkqffpdlqpt
dfekllqdhinrrdsgklnnakfrivakchsllhglldiacgfrnldialgaintfkciv
qavpltpncqilqlpnvdkehfitktgdihtlgklftledakigevlgikdqaklnetlr
vashipnlkiikadflvpgenqvtpsstpyislkvlvrsakqpliptslipeenltepqd
fesqrdpfammskqplvpysfapffptkrrgswcclvssqkdgkilqtpiiieklsyknl
nddkdffdkrikmdltkhekfdindweigtikiplgqpapetvgdfffrvivkstdyftt
dlditmnmkvrdspaveqvevyseeddeystdddetesddesdasdytdidtdteaedde
spe

    Sequence, based on observed residues (ATOM records):
    >6n3qD (D:)
tnyeydeasetwpsfiltgllmvvgpmtllqiyqfneevfknlneeytsdeikqfrrkfn
iiiivgwilvaillqrinsndaqstshgialprflvdgsaspllvvcyvallglilpyfv
srwwartqsytkkgihnvtasnfvsnlvnykpseivttdlilhwlsfahefkqffpdlqp
tdfekllqdhinrrdsgklnnakfrivakchsllhglldiacgfrnldialgaintfkci
vqavpltpncqilqlpnvdkehfitktgdihtlgklftledakigevlgikdqaklnetl
rvashipnlkiikadflvpgenqvtpsstpyislkvlvrsakqpliptslipeenltepq
dfesqrdpfammskqplvpysfapffptkrrgswcclvssqkdgkilqtpiiieklsykn
lnddkdffdkrkhekfdindweigtikiplgqpapetvgdfffrvivkstdyfttdldit
mnmkvrd

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6n3qE (E:)
msefnetkfsnngtffeteepivetksisvytpliyvfilvvslvmfassyrkkqakkis
eqpsifdendahdlyfqikemsenekihekvlkaallnrgaesvrrslklkelapqinll
ykngsigedywkrfetevklielefkdtlqeaerlqpgwvqlfvmvckeicfnqalsrry
qsilkrkevcikewelkinndgrlvn

    Sequence, based on observed residues (ATOM records):
    >6n3qE (E:)
ndahdlyfqikemsenekihekvlkaallnrgaesvrrslklkelapqinllykngsige
dywkrfetevklielefkdtlqeaerlqpgwvqlfvmvckeicfnqalsrryqsilkrke
vcikewelkinndgr

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6n3qF (F:)
mvtleynansklitasdavvalstetnidqinvlttsligetnpnftpqpnealskmikg
lfesgmknlqqkklnealknvslaiemaqrkrapweafaiqlpelhfmlrskidlclilg
khlealqdldfllgtgliqpdvfvrkadcllklrqweearatcerglalapedmklrall
ietarnlaeynge

    Sequence, based on observed residues (ATOM records):
    >6n3qF (F:)
tleynansklitasdavvalstetnidqinvlttsligetnpnftpqpnealskmikglf
esgmknlqqkklnealknvslaiemaqrkrapweafaiqlpelhfmlrskidlclilgkh
lealqdldfllgtgliqpdvfvrkadcllklrqweearatcerglalapedmklrallie
tarnlaeyng