PDB entry 6n3j

View 6n3j on RCSB PDB site
Description: MicroED Structure of the CTD-SP1 fragment of HIV-1 Gag
Class: viral protein
Keywords: Bevirimat, HIV-1 Gag, MicroED, Immature Hexagonal Lattice, VIRAL PROTEIN
Deposited on 2018-11-15, released 2018-12-12
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-12-18, with a file datestamp of 2019-12-13.
Experiment type: ELECTRONCRYSTALLOGRAPHY
Resolution: 3 Å
R-factor: N/A
AEROSPACI score: 0.14 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: CTD-SP1 fragment of HIV-1 Gag
    Species: Human immunodeficiency virus 1 [TaxId:11676]
    Gene: GAG
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6n3ja_
  • Chain 'B':
    Compound: CTD-SP1 fragment of HIV-1 Gag
    Species: Human immunodeficiency virus 1 [TaxId:11676]
    Gene: GAG
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6n3jb_
  • Chain 'C':
    Compound: CTD-SP1 fragment of HIV-1 Gag
    Species: Human immunodeficiency virus 1 [TaxId:11676]
    Gene: GAG
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6n3jc_
  • Chain 'D':
    Compound: CTD-SP1 fragment of HIV-1 Gag
    Species: Human immunodeficiency virus 1 [TaxId:11676]
    Gene: GAG
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6n3jd_
  • Chain 'E':
    Compound: CTD-SP1 fragment of HIV-1 Gag
    Species: Human immunodeficiency virus 1 [TaxId:11676]
    Gene: GAG
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6n3je_
  • Chain 'F':
    Compound: CTD-SP1 fragment of HIV-1 Gag
    Species: Human immunodeficiency virus 1 [TaxId:11676]
    Gene: GAG
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6n3jf_

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6n3jA (A:)
hmhhhhhhggsptsildirqgpkepfrdyvdrfyktlraeqasqevknwmtetllvqnan
pdcktilkalgpgatleemmtacqgvggpghkarvlaeamsqvtntatim

    Sequence, based on observed residues (ATOM records): (download) 
    >6n3jA (A:)
tsildirqgpkepfrdyvdrfyktlraeqasqevknwmtetllvqnanpdcktilkalgp
gatleemmtacqgvggpghkarvlaeamsqv

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6n3jB (B:)
hmhhhhhhggsptsildirqgpkepfrdyvdrfyktlraeqasqevknwmtetllvqnan
pdcktilkalgpgatleemmtacqgvggpghkarvlaeamsqvtntatim

    Sequence, based on observed residues (ATOM records): (download) 
    >6n3jB (B:)
tsildirqgpkepfrdyvdrfyktlraeqasqevknwmtetllvqnanpdcktilkalgp
gatleemmtacqgvggpghkarvlaeamsqv

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >6n3jC (C:)
hmhhhhhhggsptsildirqgpkepfrdyvdrfyktlraeqasqevknwmtetllvqnan
pdcktilkalgpgatleemmtacqgvggpghkarvlaeamsqvtntatim

    Sequence, based on observed residues (ATOM records): (download) 
    >6n3jC (C:)
tsildirqgpkepfrdyvdrfyktlraeqasqevknwmtetllvqnanpdcktilkalgp
gatleemmtacqgvggpghkarvlaeamsqv

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >6n3jD (D:)
hmhhhhhhggsptsildirqgpkepfrdyvdrfyktlraeqasqevknwmtetllvqnan
pdcktilkalgpgatleemmtacqgvggpghkarvlaeamsqvtntatim

    Sequence, based on observed residues (ATOM records): (download) 
    >6n3jD (D:)
sildirqgpkepfrdyvdrfyktlraeqasqevknwmtetllvqnanpdcktilkalgpg
atleemmtacqgvggpghkarvlaeamsqv

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >6n3jE (E:)
hmhhhhhhggsptsildirqgpkepfrdyvdrfyktlraeqasqevknwmtetllvqnan
pdcktilkalgpgatleemmtacqgvggpghkarvlaeamsqvtntatim

    Sequence, based on observed residues (ATOM records): (download) 
    >6n3jE (E:)
tsildirqgpkepfrdyvdrfyktlraeqasqevknwmtetllvqnanpdcktilkalgp
gatleemmtacqgvggpghkarvlaeamsqv

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >6n3jF (F:)
hmhhhhhhggsptsildirqgpkepfrdyvdrfyktlraeqasqevknwmtetllvqnan
pdcktilkalgpgatleemmtacqgvggpghkarvlaeamsqvtntatim

    Sequence, based on observed residues (ATOM records): (download) 
    >6n3jF (F:)
tsildirqgpkepfrdyvdrfyktlraeqasqevknwmtetllvqnanpdcktilkalgp
gatleemmtacqgvggpghkarvlaeamsqv