PDB entry 6n3c

View 6n3c on RCSB PDB site
Description: segb, conformation of tdp-43 low complexity domain segment a
Deposited on 2018-11-14, released 2019-06-26
The last revision was dated 2019-12-18, with a file datestamp of 2019-12-13.
Experiment type: EM
Resolution: 3.3 Å
R-factor: N/A
AEROSPACI score: 0.08 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: TAR DNA-binding protein 43
    Species: Homo sapiens [TaxId:9606]
    Gene: Tardbp, Tdp43
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q13148
      • conflict (29)
  • Chain 'B':
    Compound: TAR DNA-binding protein 43
    Species: Homo sapiens [TaxId:9606]
    Gene: Tardbp, Tdp43
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q13148
      • conflict (29)
  • Chain 'C':
    Compound: TAR DNA-binding protein 43
    Species: Homo sapiens [TaxId:9606]
    Gene: Tardbp, Tdp43
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q13148
      • conflict (29)
  • Chain 'D':
    Compound: TAR DNA-binding protein 43
    Species: Homo sapiens [TaxId:9606]
    Gene: Tardbp, Tdp43
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q13148
      • conflict (29)
  • Chain 'E':
    Compound: TAR DNA-binding protein 43
    Species: Homo sapiens [TaxId:9606]
    Gene: Tardbp, Tdp43
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q13148
      • conflict (29)
  • Chain 'F':
    Compound: TAR DNA-binding protein 43
    Species: Homo sapiens [TaxId:9606]
    Gene: Tardbp, Tdp43
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q13148
      • conflict (29)
  • Chain 'G':
    Compound: TAR DNA-binding protein 43
    Species: Homo sapiens [TaxId:9606]
    Gene: Tardbp, Tdp43
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q13148
      • conflict (29)
  • Chain 'H':
    Compound: TAR DNA-binding protein 43
    Species: Homo sapiens [TaxId:9606]
    Gene: Tardbp, Tdp43
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q13148
      • conflict (29)
  • Chain 'I':
    Compound: TAR DNA-binding protein 43
    Species: Homo sapiens [TaxId:9606]
    Gene: Tardbp, Tdp43
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q13148
      • conflict (29)
  • Chain 'J':
    Compound: TAR DNA-binding protein 43
    Species: Homo sapiens [TaxId:9606]
    Gene: Tardbp, Tdp43
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q13148
      • conflict (29)
  • Chain 'K':
    Compound: TAR DNA-binding protein 43
    Species: Homo sapiens [TaxId:9606]
    Gene: Tardbp, Tdp43
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q13148
      • conflict (29)
  • Chain 'L':
    Compound: TAR DNA-binding protein 43
    Species: Homo sapiens [TaxId:9606]
    Gene: Tardbp, Tdp43
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q13148
      • conflict (29)
  • Chain 'M':
    Compound: TAR DNA-binding protein 43
    Species: Homo sapiens [TaxId:9606]
    Gene: Tardbp, Tdp43
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q13148
      • conflict (29)
  • Chain 'N':
    Compound: TAR DNA-binding protein 43
    Species: Homo sapiens [TaxId:9606]
    Gene: Tardbp, Tdp43
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q13148
      • conflict (29)
  • Chain 'O':
    Compound: TAR DNA-binding protein 43
    Species: Homo sapiens [TaxId:9606]
    Gene: Tardbp, Tdp43
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q13148
      • conflict (29)
  • Chain 'P':
    Compound: TAR DNA-binding protein 43
    Species: Homo sapiens [TaxId:9606]
    Gene: Tardbp, Tdp43
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q13148
      • conflict (29)
  • Chain 'Q':
    Compound: TAR DNA-binding protein 43
    Species: Homo sapiens [TaxId:9606]
    Gene: Tardbp, Tdp43
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q13148
      • conflict (29)
  • Chain 'R':
    Compound: TAR DNA-binding protein 43
    Species: Homo sapiens [TaxId:9606]
    Gene: Tardbp, Tdp43
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q13148
      • conflict (29)
  • Chain 'S':
    Compound: TAR DNA-binding protein 43
    Species: Homo sapiens [TaxId:9606]
    Gene: Tardbp, Tdp43
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q13148
      • conflict (29)
  • Chain 'T':
    Compound: TAR DNA-binding protein 43
    Species: Homo sapiens [TaxId:9606]
    Gene: Tardbp, Tdp43
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q13148
      • conflict (29)

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6n3cA (A:)
qggfgnsrgggaglgnnqgsnmgggmnfgefsinpammaaaqaalq

    Sequence, based on observed residues (ATOM records):
    >6n3cA (A:)
gfgnsrgggaglgnnqgsnmgggmnfgefsin

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6n3cB (B:)
qggfgnsrgggaglgnnqgsnmgggmnfgefsinpammaaaqaalq

    Sequence, based on observed residues (ATOM records):
    >6n3cB (B:)
gfgnsrgggaglgnnqgsnmgggmnfgefsin

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6n3cC (C:)
qggfgnsrgggaglgnnqgsnmgggmnfgefsinpammaaaqaalq

    Sequence, based on observed residues (ATOM records):
    >6n3cC (C:)
gfgnsrgggaglgnnqgsnmgggmnfgefsin

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6n3cD (D:)
qggfgnsrgggaglgnnqgsnmgggmnfgefsinpammaaaqaalq

    Sequence, based on observed residues (ATOM records):
    >6n3cD (D:)
gfgnsrgggaglgnnqgsnmgggmnfgefsin

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6n3cE (E:)
qggfgnsrgggaglgnnqgsnmgggmnfgefsinpammaaaqaalq

    Sequence, based on observed residues (ATOM records):
    >6n3cE (E:)
gfgnsrgggaglgnnqgsnmgggmnfgefsin

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6n3cF (F:)
qggfgnsrgggaglgnnqgsnmgggmnfgefsinpammaaaqaalq

    Sequence, based on observed residues (ATOM records):
    >6n3cF (F:)
gfgnsrgggaglgnnqgsnmgggmnfgefsin

  • Chain 'G':
    Sequence, based on SEQRES records:
    >6n3cG (G:)
qggfgnsrgggaglgnnqgsnmgggmnfgefsinpammaaaqaalq

    Sequence, based on observed residues (ATOM records):
    >6n3cG (G:)
gfgnsrgggaglgnnqgsnmgggmnfgefsin

  • Chain 'H':
    Sequence, based on SEQRES records:
    >6n3cH (H:)
qggfgnsrgggaglgnnqgsnmgggmnfgefsinpammaaaqaalq

    Sequence, based on observed residues (ATOM records):
    >6n3cH (H:)
gfgnsrgggaglgnnqgsnmgggmnfgefsin

  • Chain 'I':
    Sequence, based on SEQRES records:
    >6n3cI (I:)
qggfgnsrgggaglgnnqgsnmgggmnfgefsinpammaaaqaalq

    Sequence, based on observed residues (ATOM records):
    >6n3cI (I:)
gfgnsrgggaglgnnqgsnmgggmnfgefsin

  • Chain 'J':
    Sequence, based on SEQRES records:
    >6n3cJ (J:)
qggfgnsrgggaglgnnqgsnmgggmnfgefsinpammaaaqaalq

    Sequence, based on observed residues (ATOM records):
    >6n3cJ (J:)
gfgnsrgggaglgnnqgsnmgggmnfgefsin

  • Chain 'K':
    Sequence, based on SEQRES records:
    >6n3cK (K:)
qggfgnsrgggaglgnnqgsnmgggmnfgefsinpammaaaqaalq

    Sequence, based on observed residues (ATOM records):
    >6n3cK (K:)
gfgnsrgggaglgnnqgsnmgggmnfgefsin

  • Chain 'L':
    Sequence, based on SEQRES records:
    >6n3cL (L:)
qggfgnsrgggaglgnnqgsnmgggmnfgefsinpammaaaqaalq

    Sequence, based on observed residues (ATOM records):
    >6n3cL (L:)
gfgnsrgggaglgnnqgsnmgggmnfgefsin

  • Chain 'M':
    Sequence, based on SEQRES records:
    >6n3cM (M:)
qggfgnsrgggaglgnnqgsnmgggmnfgefsinpammaaaqaalq

    Sequence, based on observed residues (ATOM records):
    >6n3cM (M:)
gfgnsrgggaglgnnqgsnmgggmnfgefsin

  • Chain 'N':
    Sequence, based on SEQRES records:
    >6n3cN (N:)
qggfgnsrgggaglgnnqgsnmgggmnfgefsinpammaaaqaalq

    Sequence, based on observed residues (ATOM records):
    >6n3cN (N:)
gfgnsrgggaglgnnqgsnmgggmnfgefsin

  • Chain 'O':
    Sequence, based on SEQRES records:
    >6n3cO (O:)
qggfgnsrgggaglgnnqgsnmgggmnfgefsinpammaaaqaalq

    Sequence, based on observed residues (ATOM records):
    >6n3cO (O:)
gfgnsrgggaglgnnqgsnmgggmnfgefsin

  • Chain 'P':
    Sequence, based on SEQRES records:
    >6n3cP (P:)
qggfgnsrgggaglgnnqgsnmgggmnfgefsinpammaaaqaalq

    Sequence, based on observed residues (ATOM records):
    >6n3cP (P:)
gfgnsrgggaglgnnqgsnmgggmnfgefsin

  • Chain 'Q':
    Sequence, based on SEQRES records:
    >6n3cQ (Q:)
qggfgnsrgggaglgnnqgsnmgggmnfgefsinpammaaaqaalq

    Sequence, based on observed residues (ATOM records):
    >6n3cQ (Q:)
gfgnsrgggaglgnnqgsnmgggmnfgefsin

  • Chain 'R':
    Sequence, based on SEQRES records:
    >6n3cR (R:)
qggfgnsrgggaglgnnqgsnmgggmnfgefsinpammaaaqaalq

    Sequence, based on observed residues (ATOM records):
    >6n3cR (R:)
gfgnsrgggaglgnnqgsnmgggmnfgefsin

  • Chain 'S':
    Sequence, based on SEQRES records:
    >6n3cS (S:)
qggfgnsrgggaglgnnqgsnmgggmnfgefsinpammaaaqaalq

    Sequence, based on observed residues (ATOM records):
    >6n3cS (S:)
gfgnsrgggaglgnnqgsnmgggmnfgefsin

  • Chain 'T':
    Sequence, based on SEQRES records:
    >6n3cT (T:)
qggfgnsrgggaglgnnqgsnmgggmnfgefsinpammaaaqaalq

    Sequence, based on observed residues (ATOM records):
    >6n3cT (T:)
gfgnsrgggaglgnnqgsnmgggmnfgefsin