PDB entry 6myc

View 6myc on RCSB PDB site
Description: Room-temperature structure of deuterated Tetdron (isomorph 2)
Class: fluorescent protein
Keywords: Tetdron, Fluorescent Protein, Photo-Switchable Protein, Beta-Barrel
Deposited on 2018-11-01, released 2019-11-06
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-11-18, with a file datestamp of 2020-11-13.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: N/A
AEROSPACI score: 0.28 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Photoswitchable protein Tetdron
    Species: Echinophyllia sp. SC22 [TaxId:301887]
    Gene: Dronpa
    Database cross-references and differences (RAF-indexed):
    • PDB 6MYC
    Domains in SCOPe 2.08: d6myca_
  • Chain 'B':
    Compound: Photoswitchable protein Tetdron
    Species: Echinophyllia sp. SC22 [TaxId:301887]
    Gene: Dronpa
    Database cross-references and differences (RAF-indexed):
    • PDB 6MYC
    Domains in SCOPe 2.08: d6mycb_
  • Chain 'C':
    Compound: Photoswitchable protein Tetdron
    Species: Echinophyllia sp. SC22 [TaxId:301887]
    Gene: Dronpa
    Database cross-references and differences (RAF-indexed):
    • PDB 6MYC
    Domains in SCOPe 2.08: d6mycc_
  • Chain 'D':
    Compound: Photoswitchable protein Tetdron
    Species: Echinophyllia sp. SC22 [TaxId:301887]
    Gene: Dronpa
    Database cross-references and differences (RAF-indexed):
    • PDB 6MYC
    Domains in SCOPe 2.08: d6mycd_
  • Chain 'E':
    Compound: Photoswitchable protein Tetdron
    Species: Echinophyllia sp. SC22 [TaxId:301887]
    Gene: Dronpa
    Database cross-references and differences (RAF-indexed):
    • PDB 6MYC
    Domains in SCOPe 2.08: d6myce_
  • Chain 'F':
    Compound: Photoswitchable protein Tetdron
    Species: Echinophyllia sp. SC22 [TaxId:301887]
    Gene: Dronpa
    Database cross-references and differences (RAF-indexed):
    • PDB 6MYC
    Domains in SCOPe 2.08: d6mycf_
  • Chain 'G':
    Compound: Photoswitchable protein Tetdron
    Species: Echinophyllia sp. SC22 [TaxId:301887]
    Gene: Dronpa
    Database cross-references and differences (RAF-indexed):
    • PDB 6MYC
    Domains in SCOPe 2.08: d6mycg_
  • Chain 'H':
    Compound: Photoswitchable protein Tetdron
    Species: Echinophyllia sp. SC22 [TaxId:301887]
    Gene: Dronpa
    Database cross-references and differences (RAF-indexed):
    • PDB 6MYC
    Domains in SCOPe 2.08: d6mych_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6mycA (A:)
gmsvikpdmkiklrmegavnghpfaiegvglgkpfegkqsmdlkvkeggplpfaydiltm
afcygnrvfakypenivdyfkqsfpegyswersmiyedggicnatnditldgdcyiceir
fdgvnfpangpvmqkrtvkwelsteklyvrdgvlksdgnyalsleggghyrcdfkttyka
kkvvqlpdyhsvdhhieiishdkdysnvnlhehaeahselprqak

    Sequence, based on observed residues (ATOM records): (download) 
    >6mycA (A:)
svikpdmkiklrmegavnghpfaiegvglgkpfegkqsmdlkvkeggplpfaydiltmaf
cygnrvfakypenivdyfkqsfpegyswersmiyedggicnatnditldgdcyiceirfd
gvnfpangpvmqkrtvkwelsteklyvrdgvlksdgnyalsleggghyrcdfkttykakk
vvqlpdyhsvdhhieiishdkdysnvnlhehaeahse

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6mycB (B:)
gmsvikpdmkiklrmegavnghpfaiegvglgkpfegkqsmdlkvkeggplpfaydiltm
afcygnrvfakypenivdyfkqsfpegyswersmiyedggicnatnditldgdcyiceir
fdgvnfpangpvmqkrtvkwelsteklyvrdgvlksdgnyalsleggghyrcdfkttyka
kkvvqlpdyhsvdhhieiishdkdysnvnlhehaeahselprqak

    Sequence, based on observed residues (ATOM records): (download) 
    >6mycB (B:)
svikpdmkiklrmegavnghpfaiegvglgkpfegkqsmdlkvkeggplpfaydiltmaf
cygnrvfakypenivdyfkqsfpegyswersmiyedggicnatnditldgdcyiceirfd
gvnfpangpvmqkrtvkwelsteklyvrdgvlksdgnyalsleggghyrcdfkttykakk
vvqlpdyhsvdhhieiishdkdysnvnlhehaeahse

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >6mycC (C:)
gmsvikpdmkiklrmegavnghpfaiegvglgkpfegkqsmdlkvkeggplpfaydiltm
afcygnrvfakypenivdyfkqsfpegyswersmiyedggicnatnditldgdcyiceir
fdgvnfpangpvmqkrtvkwelsteklyvrdgvlksdgnyalsleggghyrcdfkttyka
kkvvqlpdyhsvdhhieiishdkdysnvnlhehaeahselprqak

    Sequence, based on observed residues (ATOM records): (download) 
    >6mycC (C:)
svikpdmkiklrmegavnghpfaiegvglgkpfegkqsmdlkvkeggplpfaydiltmaf
cygnrvfakypenivdyfkqsfpegyswersmiyedggicnatnditldgdcyiceirfd
gvnfpangpvmqkrtvkwelsteklyvrdgvlksdgnyalsleggghyrcdfkttykakk
vvqlpdyhsvdhhieiishdkdysnvnlhehaeahse

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >6mycD (D:)
gmsvikpdmkiklrmegavnghpfaiegvglgkpfegkqsmdlkvkeggplpfaydiltm
afcygnrvfakypenivdyfkqsfpegyswersmiyedggicnatnditldgdcyiceir
fdgvnfpangpvmqkrtvkwelsteklyvrdgvlksdgnyalsleggghyrcdfkttyka
kkvvqlpdyhsvdhhieiishdkdysnvnlhehaeahselprqak

    Sequence, based on observed residues (ATOM records): (download) 
    >6mycD (D:)
svikpdmkiklrmegavnghpfaiegvglgkpfegkqsmdlkvkeggplpfaydiltmaf
cygnrvfakypenivdyfkqsfpegyswersmiyedggicnatnditldgdcyiceirfd
gvnfpangpvmqkrtvkwelsteklyvrdgvlksdgnyalsleggghyrcdfkttykakk
vvqlpdyhsvdhhieiishdkdysnvnlhehaeahse

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >6mycE (E:)
gmsvikpdmkiklrmegavnghpfaiegvglgkpfegkqsmdlkvkeggplpfaydiltm
afcygnrvfakypenivdyfkqsfpegyswersmiyedggicnatnditldgdcyiceir
fdgvnfpangpvmqkrtvkwelsteklyvrdgvlksdgnyalsleggghyrcdfkttyka
kkvvqlpdyhsvdhhieiishdkdysnvnlhehaeahselprqak

    Sequence, based on observed residues (ATOM records): (download) 
    >6mycE (E:)
svikpdmkiklrmegavnghpfaiegvglgkpfegkqsmdlkvkeggplpfaydiltmaf
cygnrvfakypenivdyfkqsfpegyswersmiyedggicnatnditldgdcyiceirfd
gvnfpangpvmqkrtvkwelsteklyvrdgvlksdgnyalsleggghyrcdfkttykakk
vvqlpdyhsvdhhieiishdkdysnvnlhehaeahse

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >6mycF (F:)
gmsvikpdmkiklrmegavnghpfaiegvglgkpfegkqsmdlkvkeggplpfaydiltm
afcygnrvfakypenivdyfkqsfpegyswersmiyedggicnatnditldgdcyiceir
fdgvnfpangpvmqkrtvkwelsteklyvrdgvlksdgnyalsleggghyrcdfkttyka
kkvvqlpdyhsvdhhieiishdkdysnvnlhehaeahselprqak

    Sequence, based on observed residues (ATOM records): (download) 
    >6mycF (F:)
svikpdmkiklrmegavnghpfaiegvglgkpfegkqsmdlkvkeggplpfaydiltmaf
cygnrvfakypenivdyfkqsfpegyswersmiyedggicnatnditldgdcyiceirfd
gvnfpangpvmqkrtvkwelsteklyvrdgvlksdgnyalsleggghyrcdfkttykakk
vvqlpdyhsvdhhieiishdkdysnvnlhehaeahse

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >6mycG (G:)
gmsvikpdmkiklrmegavnghpfaiegvglgkpfegkqsmdlkvkeggplpfaydiltm
afcygnrvfakypenivdyfkqsfpegyswersmiyedggicnatnditldgdcyiceir
fdgvnfpangpvmqkrtvkwelsteklyvrdgvlksdgnyalsleggghyrcdfkttyka
kkvvqlpdyhsvdhhieiishdkdysnvnlhehaeahselprqak

    Sequence, based on observed residues (ATOM records): (download) 
    >6mycG (G:)
vikpdmkiklrmegavnghpfaiegvglgkpfegkqsmdlkvkeggplpfaydiltmafc
ygnrvfakypenivdyfkqsfpegyswersmiyedggicnatnditldgdcyiceirfdg
vnfpangpvmqkrtvkwelsteklyvrdgvlksdgnyalsleggghyrcdfkttykakkv
vqlpdyhsvdhhieiishdkdysnvnlhehaeahse

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >6mycH (H:)
gmsvikpdmkiklrmegavnghpfaiegvglgkpfegkqsmdlkvkeggplpfaydiltm
afcygnrvfakypenivdyfkqsfpegyswersmiyedggicnatnditldgdcyiceir
fdgvnfpangpvmqkrtvkwelsteklyvrdgvlksdgnyalsleggghyrcdfkttyka
kkvvqlpdyhsvdhhieiishdkdysnvnlhehaeahselprqak

    Sequence, based on observed residues (ATOM records): (download) 
    >6mycH (H:)
svikpdmkiklrmegavnghpfaiegvglgkpfegkqsmdlkvkeggplpfaydiltmaf
cygnrvfakypenivdyfkqsfpegyswersmiyedggicnatnditldgdcyiceirfd
gvnfpangpvmqkrtvkwelsteklyvrdgvlksdgnyalsleggghyrcdfkttykakk
vvqlpdyhsvdhhieiishdkdysnvnlhehaeahse