PDB entry 6mtp

View 6mtp on RCSB PDB site
Description: crystal structure of vrc42.04 fab in complex with gp41 peptide
Deposited on 2018-10-21, released 2019-03-27
The last revision was dated 2019-12-04, with a file datestamp of 2019-11-29.
Experiment type: XRAY
Resolution: 2.04 Å
R-factor: N/A
AEROSPACI score: 0.3 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Antibody VRC42.04 Fab heavy chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6MTP (0-End)
  • Chain 'B':
    Compound: Antibody VRC42.04 Fab light chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6MTP (0-End)
  • Chain 'H':
    Compound: Antibody VRC42.04 Fab heavy chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6MTP (0-217)
  • Chain 'L':
    Compound: Antibody VRC42.04 Fab light chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6MTP (0-End)
  • Chain 'P':
    Compound: RV217 founder virus gp41 peptide
    Species: Human immunodeficiency virus 1, synthetic [TaxId:11676]
    Database cross-references and differences (RAF-indexed):
    • Uniprot A7L302 (Start-28)
      • conflict (28)
  • Chain 'Q':
    Compound: RV217 founder virus gp41 peptide
    Species: Human immunodeficiency virus 1, synthetic [TaxId:11676]
    Database cross-references and differences (RAF-indexed):
    • Uniprot A7L302 (Start-28)
      • conflict (28)
  • Heterogens: HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6mtpA (A:)
rvqlvqsgaevkkpgssvrisckasggtfstltltwvrqapgqglewmggiipllslpny
tqkfqgrltitadtststsylelsslrsedtavyfcareasgwfdkplgamgvwgqgtmv
vvssastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpav
lqssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepk

    Sequence, based on observed residues (ATOM records):
    >6mtpA (A:)
rvqlvqsgaevkkpgssvrisckasggtfstltltwvrqapgqglewmggiipllslpny
tqkfqgrltitadtststsylelsslrsedtavyfcareasgwfdkplgamgvwgqgtmv
vvssastkgpsvfplapgtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqssgly
slssvvtvpssslgtqtyicnvnhkpsntkvdkkvep

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6mtpB (B:)
eivltqspdtlslspgeratlscrasetirnnnlawyqqspgqaprllvygasstatgvp
grfsgsgsgtdftltisrlepedfavyycqqyykppgtfgqgtkvefkrtvaapsvfifp
psdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstl
tlskadyekhkvyacevthqglsspvtksfnrgec

    Sequence, based on observed residues (ATOM records):
    >6mtpB (B:)
eivltqspdtlslspgeratlscrasetirnnnlawyqqspgqaprllvygasstatgvp
grfsgsgsgtdftltisrlepedfavyycqqyykppgtfgqgtkvefkrtvaapsvfifp
psdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstl
tlskadyekhkvyacevthqglsspvtksfnrge

  • Chain 'H':
    Sequence, based on SEQRES records:
    >6mtpH (H:)
rvqlvqsgaevkkpgssvrisckasggtfstltltwvrqapgqglewmggiipllslpny
tqkfqgrltitadtststsylelsslrsedtavyfcareasgwfdkplgamgvwgqgtmv
vvssastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpav
lqssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepk

    Sequence, based on observed residues (ATOM records):
    >6mtpH (H:)
rvqlvqsgaevkkpgssvrisckasggtfstltltwvrqapgqglewmggiipllslpny
tqkfqgrltitadtststsylelsslrsedtavyfcareasgwfdkplgamgvwgqgtmv
vvssastkgpsvfplapgtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqssgly
slssvvtvpssslgtqtyicnvnhkpsntkvdkkvepk

  • Chain 'L':
    Sequence, based on SEQRES records:
    >6mtpL (L:)
eivltqspdtlslspgeratlscrasetirnnnlawyqqspgqaprllvygasstatgvp
grfsgsgsgtdftltisrlepedfavyycqqyykppgtfgqgtkvefkrtvaapsvfifp
psdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstl
tlskadyekhkvyacevthqglsspvtksfnrgec

    Sequence, based on observed residues (ATOM records):
    >6mtpL (L:)
eivltqspdtlslspgeratlscrasetirnnnlawyqqspgqaprllvygasstatgvp
grfsgsgsgtdftltisrlepedfavyycqqyykppgtfgqgtkvefkrtvaapsvfifp
psdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstl
tlskadyekhkvyacevthqglsspvtksfnrge

  • Chain 'P':
    Sequence, based on SEQRES records:
    >6mtpP (P:)
nekelleldkwaslwnwfditkwlwyikk

    Sequence, based on observed residues (ATOM records):
    >6mtpP (P:)
aslwnwfditkwlwyikk

  • Chain 'Q':
    Sequence, based on SEQRES records:
    >6mtpQ (Q:)
nekelleldkwaslwnwfditkwlwyikk

    Sequence, based on observed residues (ATOM records):
    >6mtpQ (Q:)
wnwfditkwlwyikk