PDB entry 6msy
View 6msy on RCSB PDB site
Description: Anti-HIV-1 Fab Fab 2G12 + Man4 re-refinement
Class: immune system
Keywords: HIV-1 carbohydrate broadly neutralizing antibody, hiv neutralizing antibody, anti-carbohydrate, domain-swapping, IMMUNE SYSTEM
Deposited on
2018-10-18, released
2018-11-21
The last revision prior to the SCOPe 2.08 freeze date was dated
2020-07-29, with a file datestamp of
2020-07-04.
Experiment type: XRAY
Resolution: 2 Å
R-factor: N/A
AEROSPACI score: 0.37
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'H':
Compound: FAB 2G12, heavy chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- PDB 6MSY (0-122)
- Uniprot P0DOX5 (123-End)
Domains in SCOPe 2.08: d6msyh1, d6msyh2 - Chain 'L':
Compound: FAB 2G12, light chain
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- PDB 6MSY (0-107)
- Uniprot P0DOX7 (108-End)
Domains in SCOPe 2.08: d6msyl1, d6msyl2 - Heterogens: UNX, ACT, HOH
PDB Chain Sequences:
- Chain 'H':
Sequence, based on SEQRES records: (download)
>6msyH (H:)
evqlvesggglvkaggslilscgvsnfrisahtmnwvrrvpggglewvasistsstyrdy
adavkgrftvsrddledfvylqmhkmrvedtaiyycarkgsdrlsdndpfdawgpgtvvt
vspastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavl
qssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepks
Sequence, based on observed residues (ATOM records): (download)
>6msyH (H:)
evqlvesggglvkaggslilscgvsnfrisahtmnwvrrvpggglewvasistsstyrdy
adavkgrftvsrddledfvylqmhkmrvedtaiyycarkgsdrlsdndpfdawgpgtvvt
vspastkgpsvfplapggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqssgly
slssvvtvpssqtyicnvnhkpsntkvdkkvep
- Chain 'L':
Sequence, based on SEQRES records: (download)
>6msyL (L:)
dvvmtqspstlsasvgdtititcrasqsietwlawyqqkpgkapklliykastlktgvps
rfsgsgsgteftltisglqfddfatyhcqhyagysatfgqgtrveikrtvaapsvfifpp
sdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstlt
lskadyekhkvyacevthqglsspvtksfnrge
Sequence, based on observed residues (ATOM records): (download)
>6msyL (L:)
dvvmtqspstlsasvgdtititcrasqsietwlawyqqkpgkapklliykastlktgvps
rfsgsgsgteftltisglqfddfatyhcqhyagysatfgqgtrveikrtvaapsvfifpp
sdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstlt
lskadyekhkvyacevthqglsspvtksfn