PDB entry 6msw

View 6msw on RCSB PDB site
Description: Crystal structure of BH1352 2-deoxyribose-5-phosphate from Bacillus halodurans, K184L mutant
Class: lyase
Keywords: aldolase, TIM barrel, 2-deoxyribose-5-phosphate, DRP, LYASE
Deposited on 2018-10-18, released 2019-10-23
The last revision prior to the SCOPe 2.07 freeze date was dated 2019-10-23, with a file datestamp of 2019-10-18.
Experiment type: XRAY
Resolution: 2.17 Å
R-factor: N/A
AEROSPACI score: 0.27 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: deoxyribose-phosphate aldolase
    Species: Bacillus halodurans C-125 [TaxId:272558]
    Gene: deoC, dra, BH1352
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9KD67 (Start-223)
      • engineered mutation (183)
    Domains in SCOPe 2.07: d6mswa_
  • Chain 'B':
    Compound: deoxyribose-phosphate aldolase
    Species: Bacillus halodurans C-125 [TaxId:272558]
    Gene: deoC, dra, BH1352
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9KD67 (Start-223)
      • engineered mutation (183)
    Domains in SCOPe 2.07: d6mswb_
  • Chain 'C':
    Compound: deoxyribose-phosphate aldolase
    Species: Bacillus halodurans C-125 [TaxId:272558]
    Gene: deoC, dra, BH1352
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9KD67
      • engineered mutation (183)
    Domains in SCOPe 2.07: d6mswc_
  • Chain 'D':
    Compound: deoxyribose-phosphate aldolase
    Species: Bacillus halodurans C-125 [TaxId:272558]
    Gene: deoC, dra, BH1352
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9KD67
      • engineered mutation (183)
    Domains in SCOPe 2.07: d6mswd_
  • Chain 'E':
    Compound: deoxyribose-phosphate aldolase
    Species: Bacillus halodurans C-125 [TaxId:272558]
    Gene: deoC, dra, BH1352
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9KD67
      • engineered mutation (183)
    Domains in SCOPe 2.07: d6mswe_
  • Chain 'F':
    Compound: deoxyribose-phosphate aldolase
    Species: Bacillus halodurans C-125 [TaxId:272558]
    Gene: deoC, dra, BH1352
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9KD67
      • engineered mutation (183)
    Domains in SCOPe 2.07: d6mswf_
  • Heterogens: GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6mswA (A:)
msrsiaqmidhtllkpnttedqivklceeakeysfasvcvnptwvalaaqllkdapdvkv
ctvigfplgattpevkafettnaiengatevdmvinigalkdkqyelvgrdiqavvkaae
gkaltkviietsllteeekkaacelavkagadfvktstgfsgggataedialmrkvvgpn
lgvlasggvrdlsdakamidagatrigasagvaivngersegsy

    Sequence, based on observed residues (ATOM records): (download) 
    >6mswA (A:)
rsiaqmidhtllkpnttedqivklceeakeysfasvcvnptwvalaaqllkdapdvkvct
vigfplgattpevkafettnaiengatevdmvinigalkdkqyelvgrdiqavvkaaegk
altkviietsllteeekkaacelavkagadfvktstgfsgggataedialmrkvvgpnlg
vlasggvrdlsdakamidagatrigasagvaivngersegsy

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6mswB (B:)
msrsiaqmidhtllkpnttedqivklceeakeysfasvcvnptwvalaaqllkdapdvkv
ctvigfplgattpevkafettnaiengatevdmvinigalkdkqyelvgrdiqavvkaae
gkaltkviietsllteeekkaacelavkagadfvktstgfsgggataedialmrkvvgpn
lgvlasggvrdlsdakamidagatrigasagvaivngersegsy

    Sequence, based on observed residues (ATOM records): (download) 
    >6mswB (B:)
siaqmidhtllkpnttedqivklceeakeysfasvcvnptwvalaaqllkdapdvkvctv
igfplgattpevkafettnaiengatevdmvinigalkdkqyelvgrdiqavvkaaegka
ltkviietsllteeekkaacelavkagadfvktstgfsgggataedialmrkvvgpnlgv
lasggvrdlsdakamidagatrigasagvaivngersegsy

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >6mswC (C:)
msrsiaqmidhtllkpnttedqivklceeakeysfasvcvnptwvalaaqllkdapdvkv
ctvigfplgattpevkafettnaiengatevdmvinigalkdkqyelvgrdiqavvkaae
gkaltkviietsllteeekkaacelavkagadfvktstgfsgggataedialmrkvvgpn
lgvlasggvrdlsdakamidagatrigasagvaivngersegsy

    Sequence, based on observed residues (ATOM records): (download) 
    >6mswC (C:)
siaqmidhtllkpnttedqivklceeakeysfasvcvnptwvalaaqllkdapdvkvctv
igfplgattpevkafettnaiengatevdmvinigalkdkqyelvgrdiqavvkaaegka
ltkviietsllteeekkaacelavkagadfvktstgfsgggataedialmrkvvgpnlgv
lasggvrdlsdakamidagatrigasagvaivnger

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >6mswD (D:)
msrsiaqmidhtllkpnttedqivklceeakeysfasvcvnptwvalaaqllkdapdvkv
ctvigfplgattpevkafettnaiengatevdmvinigalkdkqyelvgrdiqavvkaae
gkaltkviietsllteeekkaacelavkagadfvktstgfsgggataedialmrkvvgpn
lgvlasggvrdlsdakamidagatrigasagvaivngersegsy

    Sequence, based on observed residues (ATOM records): (download) 
    >6mswD (D:)
siaqmidhtllkpnttedqivklceeakeysfasvcvnptwvalaaqllkdapdvkvctv
igfplgattpevkafettnaiengatevdmvinigalkdkqyelvgrdiqavvkaaegka
ltkviietsllteeekkaacelavkagadfvktstgfsgggataedialmrkvvgpnlgv
lasggvrdlsdakamidagatrigasagvaivnger

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >6mswE (E:)
msrsiaqmidhtllkpnttedqivklceeakeysfasvcvnptwvalaaqllkdapdvkv
ctvigfplgattpevkafettnaiengatevdmvinigalkdkqyelvgrdiqavvkaae
gkaltkviietsllteeekkaacelavkagadfvktstgfsgggataedialmrkvvgpn
lgvlasggvrdlsdakamidagatrigasagvaivngersegsy

    Sequence, based on observed residues (ATOM records): (download) 
    >6mswE (E:)
rsiaqmidhtllkpnttedqivklceeakeysfasvcvnptwvalaaqllkdapdvkvct
vigfplgattpevkafettnaiengatevdmvinigalkdkqyelvgrdiqavvkaaegk
altkviietsllteeekkaacelavkagadfvktstgfsgggataedialmrkvvgpnlg
vlasggvrdlsdakamidagatrigasagvaivnger

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >6mswF (F:)
msrsiaqmidhtllkpnttedqivklceeakeysfasvcvnptwvalaaqllkdapdvkv
ctvigfplgattpevkafettnaiengatevdmvinigalkdkqyelvgrdiqavvkaae
gkaltkviietsllteeekkaacelavkagadfvktstgfsgggataedialmrkvvgpn
lgvlasggvrdlsdakamidagatrigasagvaivngersegsy

    Sequence, based on observed residues (ATOM records): (download) 
    >6mswF (F:)
siaqmidhtllkpnttedqivklceeakeysfasvcvnptwvalaaqllkdapdvkvctv
igfplgattpevkafettnaiengatevdmvinigalkdkqyelvgrdiqavvkaaegka
ltkviietsllteeekkaacelavkagadfvktstgfsgggataedialmrkvvgpnlgv
lasggvrdlsdakamidagatrigasagvaivn