PDB entry 6mqm

View 6mqm on RCSB PDB site
Description: vaccine-elicited nhp fp-targeting neutralizing antibody df1w-a.01 in complex with hiv fusion peptide (residue 512-519)
Deposited on 2018-10-10, released 2019-07-31
The last revision was dated 2019-11-13, with a file datestamp of 2019-11-08.
Experiment type: XRAY
Resolution: 3.48 Å
R-factor: N/A
AEROSPACI score: 0.09 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: antibody fab heavy chain
    Species: MACACA MULATTA [TaxId:9544]
    Database cross-references and differences (RAF-indexed):
    • PDB 6MQM (0-221)
  • Chain 'B':
    Compound: antibody fab light chain
    Species: MACACA MULATTA [TaxId:9544]
    Database cross-references and differences (RAF-indexed):
    • PDB 6MQM (0-216)
  • Chain 'C':
    Compound: HIV Env fusion peptide residue 512-519
    Species: Human immunodeficiency virus 1, synthetic [TaxId:11676]
    Database cross-references and differences (RAF-indexed):
    • PDB 6MQM (0-6)
  • Chain 'D':
    Compound: antibody fab heavy chain
    Species: MACACA MULATTA [TaxId:9544]
    Database cross-references and differences (RAF-indexed):
    • PDB 6MQM (0-221)
  • Chain 'E':
    Compound: antibody fab light chain
    Species: MACACA MULATTA [TaxId:9544]
    Database cross-references and differences (RAF-indexed):
    • PDB 6MQM (0-216)
  • Chain 'F':
    Compound: HIV Env fusion peptide residue 512-519
    Species: Human immunodeficiency virus 1, synthetic [TaxId:11676]
    Database cross-references and differences (RAF-indexed):
    • PDB 6MQM (0-6)
  • Chain 'G':
    Compound: antibody fab heavy chain
    Species: MACACA MULATTA [TaxId:9544]
    Database cross-references and differences (RAF-indexed):
    • PDB 6MQM (0-221)
  • Chain 'H':
    Compound: antibody fab light chain
    Species: MACACA MULATTA [TaxId:9544]
    Database cross-references and differences (RAF-indexed):
    • PDB 6MQM (0-216)
  • Chain 'I':
    Compound: HIV Env fusion peptide residue 512-519
    Species: Human immunodeficiency virus 1, synthetic [TaxId:11676]
    Database cross-references and differences (RAF-indexed):
    • PDB 6MQM (0-6)
  • Chain 'J':
    Compound: antibody fab heavy chain
    Species: MACACA MULATTA [TaxId:9544]
    Database cross-references and differences (RAF-indexed):
    • PDB 6MQM (0-221)
  • Chain 'K':
    Compound: antibody fab light chain
    Species: MACACA MULATTA [TaxId:9544]
    Database cross-references and differences (RAF-indexed):
    • PDB 6MQM (0-216)
  • Chain 'L':
    Compound: HIV Env fusion peptide residue 512-519
    Species: Human immunodeficiency virus 1, synthetic [TaxId:11676]
    Database cross-references and differences (RAF-indexed):
    • PDB 6MQM (0-6)

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records:
    >6mqmA (A:)
qvqlvesgpglvrpsetlsltcavsgasirtkawwswirqppgkglewigyvsggwdlpn
ynpslknrviilkdtslnqfslrltsvtaadtalyycaregpedfdvwgpgflvtvssas
tkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqssgl
yslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepkscd

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records:
    >6mqmB (B:)
dvvmtqsplslsitpgqpasiscrssqslvhsdgktylswyqqkpgqpprlliyqvsnwy
sgvpdrfsgsgtgtnftlkisrveaadvgvyycgqgvhlprtfgqgtkvdikrtvaapsv
fifppsedqvksgtvsvvcllnnfypreasvkwkvdgvlktgnsqesvteqdskdntysl
sstltlsntdyqshnvyacevthqglsspvtksfnrg

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records:
    >6mqmC (C:)
avgigav

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records:
    >6mqmD (D:)
qvqlvesgpglvrpsetlsltcavsgasirtkawwswirqppgkglewigyvsggwdlpn
ynpslknrviilkdtslnqfslrltsvtaadtalyycaregpedfdvwgpgflvtvssas
tkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqssgl
yslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepkscd

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records:
    >6mqmE (E:)
dvvmtqsplslsitpgqpasiscrssqslvhsdgktylswyqqkpgqpprlliyqvsnwy
sgvpdrfsgsgtgtnftlkisrveaadvgvyycgqgvhlprtfgqgtkvdikrtvaapsv
fifppsedqvksgtvsvvcllnnfypreasvkwkvdgvlktgnsqesvteqdskdntysl
sstltlsntdyqshnvyacevthqglsspvtksfnrg

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records:
    >6mqmF (F:)
avgigav

  • Chain 'G':
    Sequence; same for both SEQRES and ATOM records:
    >6mqmG (G:)
qvqlvesgpglvrpsetlsltcavsgasirtkawwswirqppgkglewigyvsggwdlpn
ynpslknrviilkdtslnqfslrltsvtaadtalyycaregpedfdvwgpgflvtvssas
tkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqssgl
yslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepkscd

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records:
    >6mqmH (H:)
dvvmtqsplslsitpgqpasiscrssqslvhsdgktylswyqqkpgqpprlliyqvsnwy
sgvpdrfsgsgtgtnftlkisrveaadvgvyycgqgvhlprtfgqgtkvdikrtvaapsv
fifppsedqvksgtvsvvcllnnfypreasvkwkvdgvlktgnsqesvteqdskdntysl
sstltlsntdyqshnvyacevthqglsspvtksfnrg

  • Chain 'I':
    Sequence; same for both SEQRES and ATOM records:
    >6mqmI (I:)
avgigav

  • Chain 'J':
    Sequence; same for both SEQRES and ATOM records:
    >6mqmJ (J:)
qvqlvesgpglvrpsetlsltcavsgasirtkawwswirqppgkglewigyvsggwdlpn
ynpslknrviilkdtslnqfslrltsvtaadtalyycaregpedfdvwgpgflvtvssas
tkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqssgl
yslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepkscd

  • Chain 'K':
    Sequence; same for both SEQRES and ATOM records:
    >6mqmK (K:)
dvvmtqsplslsitpgqpasiscrssqslvhsdgktylswyqqkpgqpprlliyqvsnwy
sgvpdrfsgsgtgtnftlkisrveaadvgvyycgqgvhlprtfgqgtkvdikrtvaapsv
fifppsedqvksgtvsvvcllnnfypreasvkwkvdgvlktgnsqesvteqdskdntysl
sstltlsntdyqshnvyacevthqglsspvtksfnrg

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records:
    >6mqmL (L:)
avgigav