PDB entry 6mnn

View 6mnn on RCSB PDB site
Description: 6236 TCR bound to I-Ab Padi4
Class: immune system
Keywords: T cell receptor, Major Histocompatibility Complex, IMMUNE SYSTEM
Deposited on 2018-10-02, released 2019-07-03
The last revision prior to the SCOPe 2.07 freeze date was dated 2019-07-03, with a file datestamp of 2019-06-28.
Experiment type: XRAY
Resolution: 2.83 Å
R-factor: N/A
AEROSPACI score: 0.15 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 6236 TCR alpha chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6MNN
    Domains in SCOPe 2.07: d6mnna1, d6mnna2
  • Chain 'B':
    Compound: 6236 TCR beta chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6MNN (0-238)
    Domains in SCOPe 2.07: d6mnnb1, d6mnnb2
  • Chain 'C':
    Compound: H-2 class II histocompatibility antigen, A-B alpha chain
    Species: Mus musculus [TaxId:10090]
    Gene: H2-Aa
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6mnnc1, d6mnnc2
  • Chain 'D':
    Compound: Padi4 (92-105) peptide and MHC Class II I-Ab beta chain
    Species: Mus musculus [TaxId:10090]
    Gene: H2-Ab1, H2-iabeta
    Database cross-references and differences (RAF-indexed):

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >6mnnA (A:)
    mqqvrqspqsltvwegetailncsyensafdyfpwyqqfpgegpalliairsvsdkkedg
    rftiffnkrekklslhitdsqpgdsatyfcaasvtgantgkltfghgtilrvhpniqnpd
    pavyqlrdskssdksvclftdfdsqtnvsqskdsdvyitdkcvldmrsmdfksnsavaws
    nksdfacanafnnsiipedtffpspess
    

    Sequence, based on observed residues (ATOM records): (download)
    >6mnnA (A:)
    qqvrqspqsltvwegetailncsyensafdyfpwyqqfpgegpalliairsvsdkkedgr
    ftiffnkrekklslhitdsqpgdsatyfcaasvtgantgkltfghgtilrvhpniqnpdp
    avyqlrdsksvclftdfdsqtnvsqskdsdvyitdkcvldmrsmdfksnsavawsndfac
    anafnnsiipedtffp
    

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download)
    >6mnnB (B:)
    avtqsprnkvavtggkvtlscnqtnnhnnmywyrqdtghglrlihysygagstekgdipd
    gykasrpsqenfslilelatpsqtsvyfcasgdfwgdtlyfgagtrlsvledlknvfppe
    vavfepseaeishtqkatlvclatgfypdhvelswwvngkevhsgvctdpqplkeqpaln
    dsryalssrlrvsatfwqnprnhfrcqvqfyglsendewtqdrakpvtqivsaeawgra
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >6mnnC (C:)
    ieadhvgtygisvyqspgdigqytfefdgdelfyvdldkketvwmlpefgqlasfdpqgg
    lqniavvkhnlgvltkrsnstpatneapqatvfpkspvllgqpntlicfvdnifppvini
    twlrnsksvadgvyetsffvnrdysfhklsyltfipsdddiydckvehwgleepvlkhw
    

    Sequence, based on observed residues (ATOM records): (download)
    >6mnnC (C:)
    ieadhvgtygisvyqspgdigqytfefdgdelfyvdldkketvwmlpefgqlasfdpqgg
    lqniavvkhnlgvltkrsnstpatneapqatvfpkspvllgqpntlicfvdnifppvini
    twnsksvadgvyetsffvnrdysfhklsyltfipsdydckvehwgleepvlkhw
    

  • Chain 'D':
    No sequence available.