PDB entry 6mkz

View 6mkz on RCSB PDB site
Description: crystal structure of murine 4-1bb/4-1bbl complex
Deposited on 2018-09-26, released 2018-12-19
The last revision was dated 2020-07-29, with a file datestamp of 2020-07-04.
Experiment type: XRAY
Resolution: 2.65 Å
R-factor: N/A
AEROSPACI score: 0.24 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: tumor necrosis factor ligand superfamily member 9
    Species: Mus musculus [TaxId:10090]
    Gene: Tnfsf9, Cd137l, Cd157l, Ly63l
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Tumor necrosis factor receptor superfamily member 9
    Species: Mus musculus [TaxId:10090]
    Gene: Tnfrsf9, Cd137, Ila, Ly63
    Database cross-references and differences (RAF-indexed):
    • Uniprot P20334 (2-End)
      • expression tag (0-1)
  • Chain 'C':
    Compound: tumor necrosis factor ligand superfamily member 9
    Species: Mus musculus [TaxId:10090]
    Gene: Tnfsf9, Cd137l, Cd157l, Ly63l
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Tumor necrosis factor receptor superfamily member 9
    Species: Mus musculus [TaxId:10090]
    Gene: Tnfrsf9, Cd137, Ila, Ly63
    Database cross-references and differences (RAF-indexed):
  • Heterogens: HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6mkzA (A:)
nttqqgspvfakllaknqaslcnttlnwhsqdgagssylsqglryeedkkelvvdspgly
yvflelklsptftntghkvqgwvslvlqakpqvddfdnlaltvelfpcsmenklvdrsws
qllllkaghrlsvglraylhgaqdayrdwelsypnttsfglflvkpdnpwe

    Sequence, based on observed residues (ATOM records):
    >6mkzA (A:)
gspvfakllaknqaslcnttlnwhsqdgagssylsqglryeedkkelvvdspglyyvfle
lklsptftntghkvqgwvslvlqakpqvddfdnaltvelfpcsmenklvdrswsqllllk
aghrlsvglraylhgaqdayrdwelsypnttsfglflvkpdnpw

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6mkzB (B:)
dpvqnscdncqpgtfcrkynpvckscppstfssiggqpncnicrvcagyfrfkkfcssth
naececiegfhclgpqctrcekdcrpgqeltkqgcktcslgtfndqngtgvcrpwtncsl
dgrsvlktgttekdvvcgp

    Sequence, based on observed residues (ATOM records):
    >6mkzB (B:)
dpvqnscdncqpgtfcrkynpvckscppstfssiggqpncnicrvcagyfrfkkfcssth
naececiegfhclgpqctrcekdcrpgqeltkqgcktcslgtfndqngtgvcrpwttekd

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6mkzC (C:)
nttqqgspvfakllaknqaslcnttlnwhsqdgagssylsqglryeedkkelvvdspgly
yvflelklsptftntghkvqgwvslvlqakpqvddfdnlaltvelfpcsmenklvdrsws
qllllkaghrlsvglraylhgaqdayrdwelsypnttsfglflvkpdnpwe

    Sequence, based on observed residues (ATOM records):
    >6mkzC (C:)
spvfakllaknqaslcnttlnwhsqdgagssylsqglryeedkkelvvdspglyyvflel
klsptfthkvqgwvslvlqakpqvddfdnlaltvelfpcsmenklvdrswsqllllkagh
rlsvglraylhgaqdayrdwelsypnttsfglflvkpdn

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6mkzD (D:)
dpvqnscdncqpgtfcrkynpvckscppstfssiggqpncnicrvcagyfrfkkfcssth
naececiegfhclgpqctrcekdcrpgqeltkqgcktcslgtfndqngtgvcrpwtncsl
dgrsvlktgttekdvvcgp

    Sequence, based on observed residues (ATOM records):
    >6mkzD (D:)
cdncqpgtfcrkynpvckscppstfssiggqpncnicrvcagyfrfkkfcssthnaecec
iegfhclgpqctrcekdcrpgqelt