PDB entry 6mkr

View 6mkr on RCSB PDB site
Description: 5287 tcr bound to iab padi4
Deposited on 2018-09-26, released 2019-07-03
The last revision was dated 2019-07-31, with a file datestamp of 2019-07-26.
Experiment type: XRAY
Resolution: 3.36 Å
R-factor: N/A
AEROSPACI score: 0.1 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 5287 TCR alpha chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6MKR
  • Chain 'B':
    Compound: 5287 TCR beta chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6MKR (0-End)
  • Chain 'C':
    Compound: H-2 class II histocompatibility antigen, A-B alpha chain
    Species: Mus musculus [TaxId:10090]
    Gene: H2-Aa
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Padi 4 (92-105) peptide and MHC Class II IAb beta chain
    Species: Mus musculus [TaxId:10090]
    Gene: H2-Ab1, H2-iabeta
    Database cross-references and differences (RAF-indexed):

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6mkrA (A:)
mqqvrqspqsltvwegetailncsyensafdyfpwyqqfpgegpallisilsvsdkkedg
rftiffnkrekklslhiadsqpgdsatyfcaasetgantgkltfghgtilrvhpniqnpd
pavyqlrdskssdksvclftdfdsqtnvsqskdsdvyitdkcvldmrsmdfksnsavaws
nksdfacanafnnsiipedtffpspess

    Sequence, based on observed residues (ATOM records):
    >6mkrA (A:)
qqvrqspqsltvwegetailncsyensafdyfpwyqqfpgegpallisilsvsdkkedgr
ftiffnkrekklslhiadsqpgdsatyfcaasetgantgkltfghgtilrvhpniqnpdp
avyqlrdsksvclftdfdsqtnvsqskdsdvyitdkcvldmrsmdfksnsavawsnfaca
nafnnsiipedtffp

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6mkrB (B:)
avtqsprnkvavtggkvtlscnqtnnhnnmywyrqdtghglrlihysygagstekgdipd
gykasrpsqenfslilelatpsqtsvyfcasgdfwgdtlyfgagtrlsvledlknvfppe
vavfepseaeishtqkatlvclatgfypdhvelswwvngkevhsgvctdpqplkeqpaln
dsryalssrlrvsatfwqnprnhfrcqvqfyglsendewtqdrakpvtqivsaeawgra

    Sequence, based on observed residues (ATOM records):
    >6mkrB (B:)
avtqsprnkvavtggkvtlscnqtnnhnnmywyrqdtghglrlihysygagstekgdipd
gykasrpsqenfslilelatpsqtsvyfcasgdfwgdtlyfgagtrlsvledlknvfppe
vavfepseaeishtqkatlvclatgfypdhvelswwvngkevhsgvctdpqplkeqpaln
dsryalssrlrvsatfwqnprnhfrcqvqfyglsendewtqdrakpvtqivsaeawgr

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6mkrC (C:)
ieadhvgtygisvyqspgdigqytfefdgdelfyvdldkketvwmlpefgqlasfdpqgg
lqniavvkhnlgvltkrsnstpatneapqatvfpkspvllgqpntlicfvdnifppvini
twlrnsksvadgvyetsffvnrdysfhklsyltfipsdddiydckvehwgleepvlkhw

    Sequence, based on observed residues (ATOM records):
    >6mkrC (C:)
ieadhvgtygisvyqspgdigqytfefdgdelfyvdldkketvwmlpefgqlasfdpqgg
lqniavvkhnlgvltkrsnstpatneapqatvfpkspvllgpntlicfvdnifppvinin
sksvadgvyetsffvnrdysfhklsyltfipsdddiydckvehwgleepvlkhw

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6mkrD (D:)
rvsyygpktspvqggggslvprgsggggserhfvyqfmgecyftngtqriryvtryiynr
eeyvrydsdvgehravtelgrpdaeywnsqpeilertraeldtvcrhnyegpethtslrr
leqpnvvislsrtealnhhntlvcsvtdfypakikvrwfrngqeetvgvsstqlirngdw
tfqvlvmlemtprrgevytchvehpslkspitvewra

    Sequence, based on observed residues (ATOM records):
    >6mkrD (D:)
rvsyygpktspvqerhfvyqfmgecyftngtqriryvtryiynreeyvrydsdvgehrav
telgrpdaeywnsqpeilertraeldtvcrhnyegpethtslrrleqpnvvislsrteal
nhhntlvcsvtdfypakikvrwfrngqeetvgvsstqlirngdwtfqvlvmlemtprrge
vytchvehpslkspitvewra