PDB entry 6mi7

View 6mi7 on RCSB PDB site
Description: nucleotide-free cryo-em structure of e.coli lptb2fgc
Deposited on 2018-09-19, released 2019-04-03
The last revision was dated 2019-12-18, with a file datestamp of 2019-12-13.
Experiment type: EM
Resolution: 4.2 Å
R-factor: N/A
AEROSPACI score: 0.04 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Lipopolysaccharide export system ATP-binding protein LptB
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: lptB, yhbG, b3201, JW3168
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Lipopolysaccharide export system ATP-binding protein LptB
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: lptB, yhbG, b3201, JW3168
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Lipopolysaccharide export system protein lptC
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: lptC, yrbK, b3199, JW3166
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Lipopolysaccharide export system permease protein LptF
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: lptF, yjgP, b4261, JW4218
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: Lipopolysaccharide export system permease protein LptG
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: lptG, yjgQ, b4262, JW5760
    Database cross-references and differences (RAF-indexed):
  • Heterogens: PGT

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6mi7A (A:)
mghhhhhhhhmatltaknlakaykgrrvvedvsltvnsgeivgllgpngagktttfymvv
givprdagniiiddddisllplhararrgigylpqeasifrrlsvydnlmavlqirddls
aeqredranelmeefhiehlrdsmgqslsggerrrveiaralaanpkfilldepfagvdp
isvidikriiehlrdsglgvlitdhnvretlavcerayivsqghliahgtpteilqdehv
krvylgedfrl

    Sequence, based on observed residues (ATOM records):
    >6mi7A (A:)
atltaknlakaykgrrvvedvsltvnsgeivgllgpngagktttfymvvgivprdagnii
iddddisllplhararrgigylpqeasifrrlsvydnlmavlqirddlsaeqredranel
meefhiehlrdsmgqslsggerrrveiaralaanpkfilldepfagvdpisvidikriie
hlrdsglgvlitdhnvretlavcerayivsqghliahgtpteilqdehvk

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6mi7B (B:)
mghhhhhhhhmatltaknlakaykgrrvvedvsltvnsgeivgllgpngagktttfymvv
givprdagniiiddddisllplhararrgigylpqeasifrrlsvydnlmavlqirddls
aeqredranelmeefhiehlrdsmgqslsggerrrveiaralaanpkfilldepfagvdp
isvidikriiehlrdsglgvlitdhnvretlavcerayivsqghliahgtpteilqdehv
krvylgedfrl

    Sequence, based on observed residues (ATOM records):
    >6mi7B (B:)
atltaknlakaykgrrvvedvsltvnsgeivgllgpngagktttfymvvgivprdagnii
iddddisllplhararrgigylpqeasifrrlsvydnlmavlqirddlsaeqredranel
meefhiehlrdsmgqslsggerrrveiaralaanpkfilldepfagvdpisvidikriie
hlrdsglgvlitdhnvretlavcerayivsqghliahgtpteilqdehvk

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6mi7C (C:)
mwshpqfekenlyfqggmskarrwviivlslavlvmiginmaekddtaqvvvnnndptyk
sehtdtlvynpegalsyrliaqhveyysdqavswftqpvlttfdkdkiptwsvkadkakl
tndrmlylyghvevnalvpdsqlrrittdnaqinlvtqdvtsedlvtlygttfnssglkm
rgnlrsknaeliekvrtsyeiqnkqtqp

    Sequence, based on observed residues (ATOM records):
    >6mi7C (C:)
mskarrwviivlslavlvmiginm

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6mi7F (F:)
miiirylvretlksqlailfillliffcqklvrilgaavdgdipanlvlsllglgvpema
qlilplslflgllmtlgklyteseitvmhacglskavlvkaamilavftaivaavnvmwa
gpwssrhqdevlaeakanpgmaalaqgqfqqatngssvlfiesvdgsdfkdvflaqirpk
gnarpsvvvadsghltqlrdgsqvvtlnqgtrfegtallrdfritdfqdyqaiighqava
ldpndtdqmdmrtlwntdtdraraelnwritlvftvfmmalmvvplsvvnprqgrvlsml
pamllyllffliqtslksnggkgkldptlwmwtvnliylalaivlnlwdtvpvrrlrasf
srkgav

    Sequence, based on observed residues (ATOM records):
    >6mi7F (F:)
iiirylvretlksqlailfillliffcqklvrilgaavdgdipanlvlsllglgvpemaq
lilplslflgllmtlgklyteseitvmhacglskavlvkaamilavftaivaavnvmwag
pwssrhqdevlaraelnwritlvftvfmmalmvvplsvvnprqgrvlsmlpamllyllff
liqtslksndptlwmwtvnliylalaivlnlwdtvpv

  • Chain 'G':
    Sequence, based on SEQRES records:
    >6mi7G (G:)
mqpfgvldryigktifttimmtlfmlvslsgiikfvdqlkkagqgsydalgagmytllsv
pkdvqiffpmaallgallglgmlaqrselvvmqasgftrmqvalsvmktaiplvlltmai
gewvapqgeqmarnyraqamyggsllstqqglwakdgnnfvyiervkgdeelggisiyaf
nenrrlqsvryaatakfdpehkvwrlsqvdesdltnpkqitgsqtvsgtwktnltpdklg
vvaldpdalsisglhnyvkylkssgqdagryqlnmwskifqplsvavmmlmalsfifgpl
rsvpmgvrvvtgisfgfvfyvldqifgpltlvygippiigallpsasfflislwllmrks

    Sequence, based on observed residues (ATOM records):
    >6mi7G (G:)
vldryigktifttimmtlfmlvslsgiikfvdqlgagmytllsvpkdvqiffpmaallga
llglgmlaqrselvvmqasgftrmqvalsvmktaiplvlltmaigewvapqgeqmarnyr
aqpdalsisglhnyvkyagryqlnmwskifqplsvavmmlmalsfifgplrsvpmgvrvv
tgisfgfvfyvldqifgpltlvygippiigallpsasfflislwllmrks