PDB entry 6mdv

View 6mdv on RCSB PDB site
Description: crystal structure of streptococcus pyogenes endo-beta-n- acetylglucosaminidase (endos2) with high-mannose glycan
Deposited on 2018-09-05, released 2019-02-06
The last revision was dated 2020-07-29, with a file datestamp of 2020-07-04.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: N/A
AEROSPACI score: 0.29 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: endo-beta-n-acetylglucosaminidase
    Species: Streptococcus pyogenes [TaxId:1314]
    Gene: ndoS2
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: endo-beta-n-acetylglucosaminidase
    Species: Streptococcus pyogenes [TaxId:1314]
    Gene: ndoS2
    Database cross-references and differences (RAF-indexed):
  • Heterogens: CA, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6mdvA (A:)
mgktdqqvgaklvqeiregkrgplyagyfrtwhdrastgidgkqqhpentmaevpkevdi
lfvfhdhtasdspfwselkdsyvhklhqqgtalvqtigvnelngrtglskdypdtpegnk
alaaaivkafvtdrgvdgldidieheftnkrtpeedaralnvfkeiaqligkngsdkskl
limdttlsvennpifkgiaedldyllrqyygsqggeaevdtinsdwnqyqnyidasqfmi
gfsffeesaskgnlwfdvneydpnnpekgkdiegtrakkyaewqpstgglkagifsyaid
rdgvahvpstyknrtstnlqrhevdnishtdytvsrklktlmtedkrydvidqkdipdpa
lreqiiqqvgqykgdlerynktlvltgdkiqnlkgleklsklqklelrqlsnvkeitpel
lpesmkkdaelvmvgmtgleklnlsglnrqtldgidvnsithltsfdishnsldlsekse
drkllmtlmeqvsnhqkitvkntafenqkpkgyypqtydtkeghydvdnaehdiltdfvf
gtvtkrntfigdeeafaiykegavdgrqyvskdytyeafrkdykgykvhltasnlgetvt
skvtattdetylvdvsdgekvvhhmklnigsgaimmenlakgakvigtsgdfeqakkifd
geksdrfftwgqtnwiafdlgeinlakewrlfnaetnteiktdsslnvakgrlqilkdtt
idlekmdiknrkeylsndenwtdvaqmddakaifnsklsnvlsrywrfcvdggassyypq
ytelqilgqrlsndvantlkdl

    Sequence, based on observed residues (ATOM records):
    >6mdvA (A:)
tdqqvgaklvqeiregkrgplyagyfrtwhdrastgidgkqqhpentmaevpkevdilfv
fhdhtasdspfwselkdsyvhklhqqgtalvqtigvnelngrtglskdypdtpegnkala
aaivkafvtdrgvdgldidieheftnkrtpeedaralnvfkeiaqligkngsdkskllim
dttlsvennpifkgiaedldyllrqyygsqggeaevdtinsdwnqyqnyidasqfmigfs
ffeesaskgnlwfdvneydpnnpekgkdiegtrakkyaewqpstgglkagifsyaidrdg
vahvpstyknrtstnlqrhevdnishtdytvsrklktlmtedkrydvidqkdipdpalre
qiiqqvgqykgdlerynktlvltgdkiqnlkgleklsklqklelrqlsnvkeitpellpe
smkkdaelvmvgmtgleklnlsglnrqtldgidvnsithltsfdishnsldlseksedrk
llmtlmeqvsnhqkitvkntafenqkpkgyypqtydtkeghydvdnaehdiltdfvfgtv
tkrntfigdeeafaiykegavdgrqyvskdytyeafrkdykgykvhltasnlgetvtskv
tattdetylvdvsdgekvvhhmklnigsgaimmenlakgakvigtsgdfeqakkifdgek
sdrfftwgqtnwiafdlgeinlakewrlfnaetnteiktdsslnvakgrlqilkdttidl
ekmdiknrkeylsndenwtdvaqmddakaifnsklsnvlsrywrfcvdggassyypqyte
lqilgqr

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6mdvB (B:)
mgktdqqvgaklvqeiregkrgplyagyfrtwhdrastgidgkqqhpentmaevpkevdi
lfvfhdhtasdspfwselkdsyvhklhqqgtalvqtigvnelngrtglskdypdtpegnk
alaaaivkafvtdrgvdgldidieheftnkrtpeedaralnvfkeiaqligkngsdkskl
limdttlsvennpifkgiaedldyllrqyygsqggeaevdtinsdwnqyqnyidasqfmi
gfsffeesaskgnlwfdvneydpnnpekgkdiegtrakkyaewqpstgglkagifsyaid
rdgvahvpstyknrtstnlqrhevdnishtdytvsrklktlmtedkrydvidqkdipdpa
lreqiiqqvgqykgdlerynktlvltgdkiqnlkgleklsklqklelrqlsnvkeitpel
lpesmkkdaelvmvgmtgleklnlsglnrqtldgidvnsithltsfdishnsldlsekse
drkllmtlmeqvsnhqkitvkntafenqkpkgyypqtydtkeghydvdnaehdiltdfvf
gtvtkrntfigdeeafaiykegavdgrqyvskdytyeafrkdykgykvhltasnlgetvt
skvtattdetylvdvsdgekvvhhmklnigsgaimmenlakgakvigtsgdfeqakkifd
geksdrfftwgqtnwiafdlgeinlakewrlfnaetnteiktdsslnvakgrlqilkdtt
idlekmdiknrkeylsndenwtdvaqmddakaifnsklsnvlsrywrfcvdggassyypq
ytelqilgqrlsndvantlkdl

    Sequence, based on observed residues (ATOM records):
    >6mdvB (B:)
tdqqvgaklvqeiregkrgplyagyfrtwhdrastgidgkqqhpentmaevpkevdilfv
fhdhtasdspfwselkdsyvhklhqqgtalvqtigvnelngrtglskdypdtpegnkala
aaivkafvtdrgvdgldidieheftnkrtpeedaralnvfkeiaqligkngsdkskllim
dttlsvennpifkgiaedldyllrqyygsqggeaevdtinsdwnqyqnyidasqfmigfs
ffeesaskgnlwfdvneydpnnpekgkdiegtrakkyaewqpstgglkagifsyaidrdg
vahvpstyknrtstnlqrhevdnishtdytvsrklktlmtedkrydvidqkdipdpalre
qiiqqvgqykgdlerynktlvltgdkiqnlkgleklsklqklelrqlsnvkeitpellpe
smkkdaelvmvgmtgleklnlsglnrqtldgidvnsithltsfdishnsldlseksedrk
llmtlmeqvsnhqkitvkntafenqkpkgyypqtydtkeghydvdnaehdiltdfvfgtv
tkrntfigdeeafaiykegavdgrqyvskdytyeafrkdykgykvhltasnlgetvtskv
tattdetylvdvsdgekvvhhmklnigsgaimmenlakgakvigtsgdfeqakkifdgek
sdrfftwgqtnwiafdlgeinlakewrlfnaetnteiktdsslnvakgrlqilkdttidl
ekmdiknrkeylsndenwtdvaqmddakaifnsklsnvlsrywrfcvdggassyypqyte
lqilgqr