PDB entry 6md6

View 6md6 on RCSB PDB site
Description: crystal structure analysis of plant exohydrolase in complex with methyl 2-thio-beta-sophoroside
Class: hydrolase
Keywords: beta barrel, hydrolase, grain development, tim barrel/beta sheet, n-glycosylation, plant apoplast
Deposited on 2018-09-04, released 2019-05-29
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-07-04.
Experiment type: XRAY
Resolution: 1.68 Å
R-factor: N/A
AEROSPACI score: 0.49 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: beta-D-glucan exohydrolase isoenzyme ExoI
    Species: Hordeum vulgare subsp. vulgare [TaxId:112509]
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A287SCR5 (3-End)
      • expression tag (2)
      • engineered mutation (323)
    Domains in SCOPe 2.08: d6md6a1, d6md6a2, d6md6a3
  • Heterogens: NAG, GOL, SO4, 1PE, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6md6A (A:)
hhaadyvlykdatkpvedrvadllgrmtlaekigqmtqierlvatpdvlrdnfigsllsg
ggsvprkgatakewqdmvdgfqkacmstrlgipmiygidavhgqnnvygatifphnvglg
atrdpylvkrigeatalevratgiqyafapciavcrdprwgrcyesysedrrivqsmtel
ipglqgdvpkdftsgmpfvagknkvaacakhfvgdggtvdginenntiinreglmnihmp
ayknamdkgvstvmisysswngvkmhanqdlvtgylkdtlkfkgfvisdwegidrittpa
gsdysysvkasilagldmimvpnkyqqfisiltghvnggvipmsriddavtrilrvkftm
glfenpyadpamaeqlgkqehrdlareaarkslvllkngktstdapllplpkkapkilva
gshadnlgyqcggwtiewqgdtgrttvgttileavkaavdpstvvvfaenpdaefvksgg
fsyaivavgehpytetkgdnlnltipepglstvqavcggvrcatvlisgrpvvvqpllaa
sdalvaawlpgsegqgvtdalfgdfgftgrlprtwfksvdqlpmnvgdahydplfrlgyg
lttnatkky

    Sequence, based on observed residues (ATOM records): (download) 
    >6md6A (A:)
aadyvlykdatkpvedrvadllgrmtlaekigqmtqierlvatpdvlrdnfigsllsggg
svprkgatakewqdmvdgfqkacmstrlgipmiygidavhgqnnvygatifphnvglgat
rdpylvkrigeatalevratgiqyafapciavcrdprwgrcyesysedrrivqsmtelip
glqgdvpkdftsgmpfvagknkvaacakhfvgdggtvdginenntiinreglmnihmpay
knamdkgvstvmisysswngvkmhanqdlvtgylkdtlkfkgfvisdwegidrittpags
dysysvkasilagldmimvpnkyqqfisiltghvnggvipmsriddavtrilrvkftmgl
fenpyadpamaeqlgkqehrdlareaarkslvllkngktstdapllplpkkapkilvags
hadnlgyqcggwtiewqgdtgrttvgttileavkaavdpstvvvfaenpdaefvksggfs
yaivavgehpytetkgdnlnltipepglstvqavcggvrcatvlisgrpvvvqpllaasd
alvaawlpgsegqgvtdalfgdfgftgrlprtwfksvdqlpmnvgdahydplfrlgyglt
tnat