PDB entry 6md3

View 6md3 on RCSB PDB site
Description: structure of t. brucei rrp44 pin domain
Deposited on 2018-09-03, released 2019-01-30
The last revision was dated 2020-01-08, with a file datestamp of 2020-01-03.
Experiment type: XRAY
Resolution: 2.29 Å
R-factor: N/A
AEROSPACI score: 0.25 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Rrp44p homologue
    Species: Trypanosoma brucei [TaxId:5691]
    Gene: RRP44
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q95Z12 (Start-194)
      • expression tag (195)
  • Chain 'B':
    Compound: Rrp44p homologue
    Species: Trypanosoma brucei [TaxId:5691]
    Gene: RRP44
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q95Z12 (Start-194)
      • expression tag (195)
  • Chain 'C':
    Compound: Rrp44p homologue
    Species: Trypanosoma brucei [TaxId:5691]
    Gene: RRP44
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q95Z12 (0-194)
      • expression tag (195)
  • Chain 'D':
    Compound: Rrp44p homologue
    Species: Trypanosoma brucei [TaxId:5691]
    Gene: RRP44
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q95Z12 (Start-194)
      • expression tag (195-196)
  • Chain 'E':
    Compound: Rrp44p homologue
    Species: Trypanosoma brucei [TaxId:5691]
    Gene: RRP44
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q95Z12 (Start-194)
      • expression tag (195-197)
  • Chain 'F':
    Compound: Rrp44p homologue
    Species: Trypanosoma brucei [TaxId:5691]
    Gene: RRP44
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q95Z12 (Start-194)
      • expression tag (195-197)
  • Heterogens: MN, ZN, CL, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6md3A (A:)
itrsdigcgtvgcklcastacqnsgnssslvptapimipdavtilhnmnamedariqniv
llstvmsevqernkaiyarlqrlvggerkqcyvfsndrheqthcvmqseetrsdfndrcv
rvagrwyaqhlalafpavtgvaeipsvvlvshdkllqsapnsaqaeenisnlscltlrqf
lagcvtagtdllemilehhhhhh

    Sequence, based on observed residues (ATOM records):
    >6md3A (A:)
digcgtvgcklcasslvptapimipdavtilhnmnamedariqnivllstvmsevqernk
aiyarlqrlvggerkqcyvfsndrheqthcvmeetrsdfndrcvrvagrwyaqhlalafp
avtgvaeipsvvlvshdkllqsisnlscltlrqflagcvtagtdllemil

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6md3B (B:)
itrsdigcgtvgcklcastacqnsgnssslvptapimipdavtilhnmnamedariqniv
llstvmsevqernkaiyarlqrlvggerkqcyvfsndrheqthcvmqseetrsdfndrcv
rvagrwyaqhlalafpavtgvaeipsvvlvshdkllqsapnsaqaeenisnlscltlrqf
lagcvtagtdllemilehhhhhh

    Sequence, based on observed residues (ATOM records):
    >6md3B (B:)
sdigcgtvgcklcassslvptapimipdavtilhnmnamedariqnivllstvmsevqer
nkaiyarlqrlvggerkqcyvfsndrheqthcvmqseetrsdfndrcvrvagrwyaqhla
lafpavtgvaeipsvvlvshdkllqnisnlscltlrqflagcvtagtdllemil

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6md3C (C:)
itrsdigcgtvgcklcastacqnsgnssslvptapimipdavtilhnmnamedariqniv
llstvmsevqernkaiyarlqrlvggerkqcyvfsndrheqthcvmqseetrsdfndrcv
rvagrwyaqhlalafpavtgvaeipsvvlvshdkllqsapnsaqaeenisnlscltlrqf
lagcvtagtdllemilehhhhhh

    Sequence, based on observed residues (ATOM records):
    >6md3C (C:)
itrsdigcgtvgcklcastasslvptapimipdavtilhnmnamedariqnivllstvms
evqernkaiyarlqrlvggerkqcyvfsndrheqthcvmqseetrsdfndrcvrvagrwy
aqhlalafpavtgvaeipsvvlvshdkllqenisnlscltlrqflagcvtagtdllemil

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6md3D (D:)
itrsdigcgtvgcklcastacqnsgnssslvptapimipdavtilhnmnamedariqniv
llstvmsevqernkaiyarlqrlvggerkqcyvfsndrheqthcvmqseetrsdfndrcv
rvagrwyaqhlalafpavtgvaeipsvvlvshdkllqsapnsaqaeenisnlscltlrqf
lagcvtagtdllemilehhhhhh

    Sequence, based on observed residues (ATOM records):
    >6md3D (D:)
igcgtvgcklcaslvptapimipdavtilhnmnamedariqnivllstvmsevqernkai
yarlqrlvggerkqcyvfsndrheqthcvmqsdfndrcvrvagrwyaqhlalafpavtgv
aeipsvvlvshdkllqisnlscltlrqflagcvtagtdllemile

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6md3E (E:)
itrsdigcgtvgcklcastacqnsgnssslvptapimipdavtilhnmnamedariqniv
llstvmsevqernkaiyarlqrlvggerkqcyvfsndrheqthcvmqseetrsdfndrcv
rvagrwyaqhlalafpavtgvaeipsvvlvshdkllqsapnsaqaeenisnlscltlrqf
lagcvtagtdllemilehhhhhh

    Sequence, based on observed residues (ATOM records):
    >6md3E (E:)
igcgtvgcklcssslvptapimipdavtilhnmnamedariqnivllstvmsevqernka
iyarlqrlvggerkqcyvfsndrheqthcvmtrsdfndrcvrvagrwyaqhlalafpavt
gvaeipsvvlvshdkllnisnlscltlrqflagcvtagtdllemileh

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6md3F (F:)
itrsdigcgtvgcklcastacqnsgnssslvptapimipdavtilhnmnamedariqniv
llstvmsevqernkaiyarlqrlvggerkqcyvfsndrheqthcvmqseetrsdfndrcv
rvagrwyaqhlalafpavtgvaeipsvvlvshdkllqsapnsaqaeenisnlscltlrqf
lagcvtagtdllemilehhhhhh

    Sequence, based on observed residues (ATOM records):
    >6md3F (F:)
sdigcgtvgcklcastasslvptapimipdavtilhnmnamedariqnivllstvmsevq
ernkaiyarlqrlvggerkqcyvfsndrheqthcvmqseetrsdfndrcvrvagrwyaqh
lalafpavtgvaeipsvvlvshdkllqsnisnlscltlrqflagcvtagtdllemileh