PDB entry 6m81

View 6m81 on RCSB PDB site
Description: crystal structure of tylm1 y14f bound to sah and dtdp-phenol
Deposited on 2018-08-21, released 2019-03-13
The last revision was dated 2019-11-27, with a file datestamp of 2019-11-22.
Experiment type: XRAY
Resolution: 1.78 Å
R-factor: N/A
AEROSPACI score: 0.37 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: dTDP-3-amino-3,6-dideoxy-alpha-D-glucopyranose N,N-dimethyltransferase
    Species: Streptomyces fradiae [TaxId:1906]
    Gene: tylM1, tylMI
    Database cross-references and differences (RAF-indexed):
    • Uniprot P95748
      • engineered mutation (13)
  • Chain 'B':
    Compound: dTDP-3-amino-3,6-dideoxy-alpha-D-glucopyranose N,N-dimethyltransferase
    Species: Streptomyces fradiae [TaxId:1906]
    Gene: tylM1, tylMI
    Database cross-references and differences (RAF-indexed):
    • Uniprot P95748
      • engineered mutation (13)
  • Chain 'C':
    Compound: dTDP-3-amino-3,6-dideoxy-alpha-D-glucopyranose N,N-dimethyltransferase
    Species: Streptomyces fradiae [TaxId:1906]
    Gene: tylM1, tylMI
    Database cross-references and differences (RAF-indexed):
    • Uniprot P95748
      • engineered mutation (13)
  • Chain 'D':
    Compound: dTDP-3-amino-3,6-dideoxy-alpha-D-glucopyranose N,N-dimethyltransferase
    Species: Streptomyces fradiae [TaxId:1906]
    Gene: tylM1, tylMI
    Database cross-references and differences (RAF-indexed):
    • Uniprot P95748
      • engineered mutation (13)
  • Heterogens: SAH, TLO, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6m81A (A:)
mahssatagpqadfsgeiaelydlvhqgkgkdyhreaadlaalvrrhspkaaslldvacg
tgmhlrhladsfgtveglelsadmlaiarrrnpdavlhhgdmrdfslgrrfsavtcmfss
ighlagqaeldaalerfaahvlpdgvvvvepwwfpenftpgyvaagtveaggttvtrvsh
ssregeatrievhylvagpdrgithheeshritlftreqyeraftaaglsvefmpggpsg
rglftglpgakgetrlehhhhhh

    Sequence, based on observed residues (ATOM records):
    >6m81A (A:)
qadfsgeiaelydlvhqgkgkdyhreaadlaalvrrhspkaaslldvacgtgmhlrhlad
sfgtveglelsadmlaiarrrnpdavlhhgdmrdfslgrrfsavtcmfssighlagqael
daalerfaahvlpdgvvvvepwwfpenftpgyvaagtveaggttvtrvshssregeatri
evhylvagpdrgithheeshritlftreqyeraftaaglsvefmpggpsgrglftglpg

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6m81B (B:)
mahssatagpqadfsgeiaelydlvhqgkgkdyhreaadlaalvrrhspkaaslldvacg
tgmhlrhladsfgtveglelsadmlaiarrrnpdavlhhgdmrdfslgrrfsavtcmfss
ighlagqaeldaalerfaahvlpdgvvvvepwwfpenftpgyvaagtveaggttvtrvsh
ssregeatrievhylvagpdrgithheeshritlftreqyeraftaaglsvefmpggpsg
rglftglpgakgetrlehhhhhh

    Sequence, based on observed residues (ATOM records):
    >6m81B (B:)
dfsgeiaelydlvhqgkgkdyhreaadlaalvrrhspkaaslldvacgtgmhlrhladsf
gtveglelsadmlaiarrrnpdavlhhgdmrdfslgrrfsavtcmfssighlagqaelda
alerfaahvlpdgvvvvepwwfpenftpgyvaagtveaggttvtrvshssregeatriev
hylvagpdrgithheeshritlftreqyeraftaaglsvefmpggpsgrglftglpga

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6m81C (C:)
mahssatagpqadfsgeiaelydlvhqgkgkdyhreaadlaalvrrhspkaaslldvacg
tgmhlrhladsfgtveglelsadmlaiarrrnpdavlhhgdmrdfslgrrfsavtcmfss
ighlagqaeldaalerfaahvlpdgvvvvepwwfpenftpgyvaagtveaggttvtrvsh
ssregeatrievhylvagpdrgithheeshritlftreqyeraftaaglsvefmpggpsg
rglftglpgakgetrlehhhhhh

    Sequence, based on observed residues (ATOM records):
    >6m81C (C:)
dfsgeiaelydlvhqgkgkdyhreaadlaalvrrhspkaaslldvacgtgmhlrhladsf
gtveglelsadmlaiarrrnpdavlhhgdmrdfslgrrfsavtcmfssighlagqaelda
alerfaahvlpdgvvvvepwwfpenftpgyvaagtveaggttvtrvshssregeatriev
hylvagpdrgithheeshritlftreqyeraftaaglsvefmpggpsgrglftglpg

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6m81D (D:)
mahssatagpqadfsgeiaelydlvhqgkgkdyhreaadlaalvrrhspkaaslldvacg
tgmhlrhladsfgtveglelsadmlaiarrrnpdavlhhgdmrdfslgrrfsavtcmfss
ighlagqaeldaalerfaahvlpdgvvvvepwwfpenftpgyvaagtveaggttvtrvsh
ssregeatrievhylvagpdrgithheeshritlftreqyeraftaaglsvefmpggpsg
rglftglpgakgetrlehhhhhh

    Sequence, based on observed residues (ATOM records):
    >6m81D (D:)
qadfsgeiaelydlvhqgkgkdyhreaadlaalvrrhspkaaslldvacgtgmhlrhlad
sfgtveglelsadmlaiarrrnpdavlhhgdmrdfslgrrfsavtcmfssighlagqael
daalerfaahvlpdgvvvvepwwfpenftpgyvaagtveaggttvtrvshssregeatri
evhylvagpdrgithheeshritlftreqyeraftaaglsvefmpggpsgrglftglpg