PDB entry 6m6m

View 6m6m on RCSB PDB site
Description: The crystal structure of glycosidase mutant
Class: hydrolase
Keywords: Glycosidase, Notoginsenoside, Mutant, HYDROLASE
Deposited on 2020-03-15, released 2021-03-17
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-03-17, with a file datestamp of 2021-03-12.
Experiment type: XRAY
Resolution: 2.07 Å
R-factor: N/A
AEROSPACI score: 0.38 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Beta-glucosidase
    Species: Kribbella flavida (strain DSM 17836 / JCM 10339 / NBRC 14399) [TaxId:479435]
    Gene: Kfla_5268
    Database cross-references and differences (RAF-indexed):
    • Uniprot D2PL27 (1-446)
      • expression tag (0)
      • engineered mutation (248)
      • engineered mutation (410)
    Domains in SCOPe 2.08: d6m6ma1, d6m6ma2
  • Chain 'B':
    Compound: Beta-glucosidase
    Species: Kribbella flavida (strain DSM 17836 / JCM 10339 / NBRC 14399) [TaxId:479435]
    Gene: Kfla_5268
    Database cross-references and differences (RAF-indexed):
    • Uniprot D2PL27 (1-446)
      • engineered mutation (248)
      • engineered mutation (410)
    Domains in SCOPe 2.08: d6m6mb_
  • Heterogens: TRS, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6m6mA (A:)
fmvelsplrqdfvwgtatsayqiegavaddgrlpsiwdtfcrvpgaidngdtgdvacdsy
hrwpedlallkqlgvdayrfsiawprviptgsgavntagldyydrvvddllaegikpfvt
lyhwdlpqalqdlggwdnrdtayrfaeyaavvgaklgdrvrdwvtlneplcsawighweg
rmapgitdpaiavrasynlllahglgvaalrdacpeppavglvvnlsgcepasqspedir
aariadghfnrwwldptsgrgfpadmvetygvelperpgdleiiaaptdfiglnyyfrqi
ieadgsvpvlgfsqvpgpnaehtmidwevhpagleelilrlakeygaekiyvtengsawv
dqpdaefavddpdrtayleehlaacvraveqgaplagyfawslmdnfewargyaprfgla
yvdyptgtrvmktsgkryadlirghre

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6m6mB (B:)
fmvelsplrqdfvwgtatsayqiegavaddgrlpsiwdtfcrvpgaidngdtgdvacdsy
hrwpedlallkqlgvdayrfsiawprviptgsgavntagldyydrvvddllaegikpfvt
lyhwdlpqalqdlggwdnrdtayrfaeyaavvgaklgdrvrdwvtlneplcsawighweg
rmapgitdpaiavrasynlllahglgvaalrdacpeppavglvvnlsgcepasqspedir
aariadghfnrwwldptsgrgfpadmvetygvelperpgdleiiaaptdfiglnyyfrqi
ieadgsvpvlgfsqvpgpnaehtmidwevhpagleelilrlakeygaekiyvtengsawv
dqpdaefavddpdrtayleehlaacvraveqgaplagyfawslmdnfewargyaprfgla
yvdyptgtrvmktsgkryadlirghre

    Sequence, based on observed residues (ATOM records): (download) 
    >6m6mB (B:)
mvelsplrqdfvwgtatsayqiegavaddgrlpsiwdtfcrvpgaidngdtgdvacdsyh
rwpedlallkqlgvdayrfsiawprviptgsgavntagldyydrvvddllaegikpfvtl
yhwdlpqalqdlggwdnrdtayrfaeyaavvgaklgdrvrdwvtlneplcsawighwegr
mapgitdpaiavrasynlllahglgvaalrdacpeppavglvvnlsgcepasqspedira
ariadghfnrwwldptsgrgfpadmvetygvelperpgdleiiaaptdfiglnyyfrqii
eadgsvpvlgfsqvpgpnaehtmidwevhpagleelilrlakeygaekiyvtengsawvd
qpdaefavddpdrtayleehlaacvraveqgaplagyfawslmdnfewargyaprfglay
vdyptgtrvmktsgkryadlirghre