PDB entry 6m5v

View 6m5v on RCSB PDB site
Description: the coordinate of the hexameric terminase complex in the presence of the adp-bef3
Deposited on 2020-03-11, released 2020-10-28
The last revision was dated 2020-10-28, with a file datestamp of 2020-10-23.
Experiment type: EM
Resolution: 4.5 Å
R-factor: N/A
AEROSPACI score: 0.06 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Tripartite terminase subunit 3
    Species: Human alphaherpesvirus 1 strain 17 [TaxId:10299]
    Gene: TRM3, UL15
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Tripartite terminase subunit 1
    Species: Human alphaherpesvirus 1 strain 17 [TaxId:10299]
    Gene: TRM1, UL28
    Database cross-references and differences (RAF-indexed):
    • Uniprot P10212 (0-770)
      • engineered mutation (214)
      • engineered mutation (310)
  • Chain 'C':
    Compound: Tripartite terminase subunit 2
    Species: Human alphaherpesvirus 1 strain 17 [TaxId:10299]
    Gene: UL33, TRM2
    Database cross-references and differences (RAF-indexed):
  • Heterogens: ADP, BEF, MG, ZN

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6m5vA (A:)
gdalrvpfldfatatpkrhqtvvpgvgtlhdccehsplfsavarrllfnslvpaqlkgrd
fggdhtakleflapelvravarlrfkecapadvvpqrnayysvlntfqalhrseafrqlv
hfvrdfaqllktsfrassltettgppkkrakvdvathgrtygtlelfqkmilmhatyfla
avllgdhaeqvntflrlvfeiplfsdaavrhfrqratvflvprrhgktwflvplialsla
sfrgikigytahirkatepvfeeidaclrgwfgsarvdhvkgetisfsfpdgsrstivfa
sshntngirgqdfnllfvdeanfirpdavqtimgflnqanckiifvsstntgkastsfly
nlrgaadellnvvtyicddhmprvvthtnatacscyilnkpvfitmdgavrrtadlflad
sfmqeiiggqaretgddrpvltksagerfllyrpstttnsglmapdlyvyvdpaftantr
asgtgvavvgryrddyiifalehfflraltgsapadiarcvvhsltqvlalhpgafrgvr
vavegnssqdsavaiathvhtemhrllasegadagsgpellfyhceppgsavlypfflln
kqktpafehfikkfnsggvmasqeivsatvrlqtdpveylleqlnnltetvspntdvrty
sgkrngasddlmvavimaiylaaqagppht

    Sequence, based on observed residues (ATOM records):
    >6m5vA (A:)
gdalrvpfldfatatpkrhqtvvpgvgtlhdccehsplfsavarrllfnslvpaqlkgrd
fggdhtakleflapelvravarlrfkecapadvvpqrnayysvlntfqalhrseafrqlv
hfvrdfaqllktsfrassltygtlelfqkmilmhatyflaavllgdhaeqvntflrlvfe
iplfsdaavrhfrqratvflvprrhgktwflvplialslasfrgikigytahirtepvfe
eidaclrgwfgsarvdhvkgetisfsfpdgsrstivfasshqdfnllfvdeanfirpdav
qtimgflnqanckiifvsstntgkastsflynlrgaadellnvvtyicddhmprvvthtn
atacscpvltksagerfllyrpstttnsglmapdlyvyvdpaftantrasgtgvavvgry
rddyiifalehfflraltgsapadiarcvvhsltqvlalhpgafrgvrvavegnssqdsa
vaiathvhtemhrgpellfyhceppgsavlypffllnkqktpafehfikkfnsggvmasq
eivsatvrlqtdpveylleqlnnltsddlmvavimaiylagppht

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6m5vB (B:)
aapvseptvarqkllallgqvqtyvfqiellrrcdphigrgklpqlklnalqvralrrrl
rpgleaqagafltplsvtlellleyawregerllgsletfatagdvaafftetmglarpc
pyhqrvrldtyggtvhmelcflhdvenflkqlnychlitpsrgataalervrefmvgavg
sglivppelsdpshpcavcfeelcvtanqgatiasrladricnhvtqqaqvrldanelrr
ylphaaglsdadraralsvldhalartaggdgqphpspendsvrkeadalleahdvfqat
tpglyaiselqfwlasgdragqttmdafasnltalarrelqqetaavavelalfgrraeh
fdrafgshlaaldmvdaliiggqatspddqiealiracydhhlttpllrrlvspeqcdee
alrrvlarmgaggaadapkggagpdddgdrvaveegarglgapggggededrrrgpggqg
petwgdiatqaaadvrerrrlyadrltkrslaslgrcvreqrgelekmlrvsvhgevlpa
tfaavangfaararfcaltagagtvidnrsapgvfdahrfmrasllrhqvdpallpsith
rffelvngplfdhsthsfaqppntalyysvenvgllphlkeelarfimgaggsgadwavs
efqrfycfdgisgitptqraawryireliiattlfasvyrcgelelrrpdcsrptsegry
ryppgvyltydsdcplvaivesapdgcigprsvvvydrdvfsilysvlqhl

    Sequence, based on observed residues (ATOM records):
    >6m5vB (B:)
aapvseptvarqkllallgqvqtyvfqiellrrcdphigrgklpqlklnalqvralrrrl
rpgleaqagafltplsvtlellleyawregerllgsletfatagdvaafftetmglarpc
pyhqrvrldtyggtvhmelcflhdvenflkqlnychlitpsrgataalervrefmvgavg
sglivppelsdpshpcavcfeelcvtanqgatiasrladricnhvtqqaqvrldanelrr
ylphaaglsdadraralsvldhalayaiselqfwlasgdragqttmdafasnltalarre
lqqetaavavelalfgrraehfdrafgshlaaldmvdaliiggqatspddqiealiracy
dhhpllrrlvspeqcdeealrrvlarwgdiatqaaadvrerrrlyadrltkrslaslgrc
vreqrgelekmlrvsvhgevlpatfaavangfaararfcaltagagtvidnrsapgvfda
hrfmrasllrhqvdpallpsithrffelvngplfdhsthsfaqppntalyysvenvgllp
hlkeelarfimggadwavsefqrfycfdgisgitptqraawryireliiattlfasvyrc
gelelrrpdcsrptsegryryppgvyltydsdcplvaivesapdgcigprsvvvydrdvf
silysvlqhl

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6m5vC (C:)
lrdtipdcalrsqtlesldaryvsrdgahdaavwfedmtpaelevvfpttdaklnylsrt
qrlaslltyagpikapddaaapqtpdtacvhgellarkrerfaavinrfldlhqilr

    Sequence, based on observed residues (ATOM records):
    >6m5vC (C:)
lrdtipdcalrsqtlesldaryvsrdgahdaavwfedmtpaelevvfpttdaklnylsrt
qrlaslltyatpdtacvhgellarkrerfaavinrfldlhqilr