PDB entry 6m5s

View 6m5s on RCSB PDB site
Description: the coordinates of the apo hexameric terminase complex
Deposited on 2020-03-11, released 2020-10-28
The last revision was dated 2020-10-28, with a file datestamp of 2020-10-23.
Experiment type: EM
Resolution: 3.9 Å
R-factor: N/A
AEROSPACI score: 0.11 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Tripartite terminase subunit 3
    Species: Human alphaherpesvirus 1 strain 17 [TaxId:10299]
    Gene: TRM3, UL15
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Tripartite terminase subunit 1
    Species: Human alphaherpesvirus 1 strain 17 [TaxId:10299]
    Gene: TRM1, UL28
    Database cross-references and differences (RAF-indexed):
    • Uniprot P10212 (0-773)
      • engineered mutation (214)
      • engineered mutation (310)
  • Chain 'C':
    Compound: Tripartite terminase subunit 2
    Species: Human alphaherpesvirus 1 strain 17 [TaxId:10299]
    Gene: UL33, TRM2
    Database cross-references and differences (RAF-indexed):
  • Heterogens: ZN

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6m5sA (A:)
tmggdalrvpfldfatatpkrhqtvvpgvgtlhdccehsplfsavarrllfnslvpaqlk
grdfggdhtakleflapelvravarlrfkecapadvvpqrnayysvlntfqalhrseafr
qlvhfvrdfaqllktsfrassltettgppkkrakvdvathgrtygtlelfqkmilmhaty
flaavllgdhaeqvntflrlvfeiplfsdaavrhfrqratvflvprrhgktwflvplial
slasfrgikigytahirkatepvfeeidaclrgwfgsarvdhvkgetisfsfpdgsrsti
vfasshntngirgqdfnllfvdeanfirpdavqtimgflnqanckiifvsstntgkasts
flynlrgaadellnvvtyicddhmprvvthtnatacscyilnkpvfitmdgavrrtadlf
ladsfmqeiiggqaretgddrpvltksagerfllyrpstttnsglmapdlyvyvdpafta
ntrasgtgvavvgryrddyiifalehfflraltgsapadiarcvvhsltqvlalhpgafr
gvrvavegnssqdsavaiathvhtemhrllasegadagsgpellfyhceppgsavlypff
llnkqktpafehfikkfnsggvmasqeivsatvrlqtdpveylleqlnnltetvspntdv
rtysgkrngasddlmvavimaiylaaqagppht

    Sequence, based on observed residues (ATOM records):
    >6m5sA (A:)
tmggdalrvpfldfatatpkrhqtvvpgvgtlhdccehsplfsavarrllfnslvpaqlk
grdfggdhtakleflapelvravarlrfkecapadvvpqrnayysvlntfqalhrseafr
qlvhfvrdfaqllktsfrassltgrtygtlelfqkmilmhatyflaavllgdhaeqvntf
lrlvfeiplfsdaavrhfrqratvflvprrhgktwflvplialslasfrgikigytahir
katepvfeeidaclrgwfgsarvdhvkgetisfsfpdgsrstivfasshntngirgqdfn
llfvdeanfirpdavqtimgflnqanckiifvsstntgkastsflynlrgaadellnvvt
yicddhmprvvthtnatacscyilnkpvfitmdgavrrtadlfladsfmqeiiggqaret
gddrpvltksagerfllyrpstttnsglmapdlyvyvdpaftantrasgtgvavvgryrd
dyiifalehfflraltgsapadiarcvvhsltqvlalhpgafrgvrvavegnssqdsava
iathvhtemhrgpellfyhceppgsavlypffllnkqktpafehfikkfnsggvmasqei
vsatvrlqtdpveylleqlnnltsddlmvavimaiylaaqagppht

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6m5sB (B:)
aapvseptvarqkllallgqvqtyvfqiellrrcdphigrgklpqlklnalqvralrrrl
rpgleaqagafltplsvtlellleyawregerllgsletfatagdvaafftetmglarpc
pyhqrvrldtyggtvhmelcflhdvenflkqlnychlitpsrgataalervrefmvgavg
sglivppelsdpshpcavcfeelcvtanqgatiasrladricnhvtqqaqvrldanelrr
ylphaaglsdadraralsvldhalartaggdgqphpspendsvrkeadalleahdvfqat
tpglyaiselqfwlasgdragqttmdafasnltalarrelqqetaavavelalfgrraeh
fdrafgshlaaldmvdaliiggqatspddqiealiracydhhlttpllrrlvspeqcdee
alrrvlarmgaggaadapkggagpdddgdrvaveegarglgapggggededrrrgpggqg
petwgdiatqaaadvrerrrlyadrltkrslaslgrcvreqrgelekmlrvsvhgevlpa
tfaavangfaararfcaltagagtvidnrsapgvfdahrfmrasllrhqvdpallpsith
rffelvngplfdhsthsfaqppntalyysvenvgllphlkeelarfimgaggsgadwavs
efqrfycfdgisgitptqraawryireliiattlfasvyrcgelelrrpdcsrptsegry
ryppgvyltydsdcplvaivesapdgcigprsvvvydrdvfsilysvlqhlapr

    Sequence, based on observed residues (ATOM records):
    >6m5sB (B:)
aapvseptvarqkllallgqvqtyvfqiellrrcdphigrgklpqlklnalqvralrrrl
rpgleaqagafltplsvtlellleyawregerllgsletfatagdvaafftetmglarpc
pyhqrvrldtyggtvhmelcflhdvenflkqlnychlitpsrgataalervrefmvgavg
sglivppelsdpshpcavcfeelcvtanqgatiasrladricnhvtqqaqvrldanelrr
ylphaaglsdadraralsvldhalaryaiselqfwlasgdragqttmdafasnltalarr
elqqetaavavelalfgrraehfdrafgshlaaldmvdaliiggqatspddqiealirac
ydhhlttpllrrlvspeqcdeealrrvlarmgaggqgpetwgdiatqaaadvrerrrlya
drltkrslaslgrcvreqrgelekmlrvsvhgevlpatfaavangfaararfcaltagag
tvidnrsapgvfdahrfmrasllrhqvdpallpsithrffelvngplfdhsthsfaqppn
talyysvenvgllphlkeelarfimgasgadwavsefqrfycfdgisgitptqraawryi
reliiattlfasvyrcgelelrrpdcsrptsegryryppgvyltydsdcplvaivesapd
gcigprsvvvydrdvfsilysvlqhlapr

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6m5sC (C:)
tlrdtipdcalrsqtlesldaryvsrdgahdaavwfedmtpaelevvfpttdaklnylsr
tqrlaslltyagpikapddaaapqtpdtacvhgellarkrerfaavinrfldlhqilr

    Sequence, based on observed residues (ATOM records):
    >6m5sC (C:)
tlrdtipdcalrsqtlesldaryvsrdgahdaavwfedmtpaelevvfpttdaklnylsr
tqrlaslltyatpdtacvhgellarkrerfaavinrfldlhqilr