PDB entry 6m5a

View 6m5a on RCSB PDB site
Description: crystal structure of gh121 beta-l-arabinobiosidase hypba2 from bifidobacterium longum
Deposited on 2020-03-10, released 2020-06-03
The last revision was dated 2020-07-01, with a file datestamp of 2020-06-26.
Experiment type: XRAY
Resolution: 1.85 Å
R-factor: N/A
AEROSPACI score: 0.35 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Beta-L-arabinobiosidase
    Species: Bifidobacterium longum [TaxId:216816]
    Gene: DWV93_04865
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A413AH52 (Start-862)
      • expression tag (863-864)
  • Heterogens: PEG, PGE, EDO, PG4, CA, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6m5aA (A:)
madapviknadvaypsfkgsddpmktaannttynpavsylqetfdndvknlagidtdhdf
widkiltrtgaqptgkgtndkgaysyegsdgnnylftrgraaymythtpnqlgfvgdtay
wdqtsrsgftvtvnadgsnqtlnedasqrkqtpsyftslfqtggkslkikevkyitynnv
mvanltvestqdrdvtlttaspfaaegadgateltgrvnvknnlttiyprfsannqdgsn
wivsggkltstlslkanepqtvkiqlglianelpdstkeyearytgdlkdaaasykdsvt
tynkwwvdnapyvdtpednidktvvyrwwlsrfnmldanmpgntfqyptsiegvlgynnq
ivltsgmfmmdtkwfrnpeysygtwlsagdtakkskagyyyyhdnpgdpanwnhsytqyi
tragwdsykvhggpstvaeeladqgaedvqgllasksepdnndnqnnndnslidwswwsm
tgndadavsfsepgrsgqrmdradgsanmwananaaaqaykaagdtanaekmqaiadkiq
kevttelwdksdnllkhkwlndgafakykeinnyypyseglmptgnedynkalrlfedsn
efpifpfftanqadkaalnfpgsnnfsiinaqpllqvysagirnydaakngyitneqfkk
llywvafahyqggdnnypdqnefwnednnnvgdvngdgvinnldknldaaqnggkityrs
wihhtqlgttnwtmvedvagmvprednkielnpieipgwnyftvnnlryhdqdvsivwdk
dgshyggpagyslyvggklaftsdklahliydpaagtvevkddssaqvtvgaeavknvka
anqvtfnadqrvtdlfaksgtnvlehhhhhh

    Sequence, based on observed residues (ATOM records):
    >6m5aA (A:)
iknadvaypsfkgsddpmktaannttynpavsylqetfdndvknlagidtdhdfwidkil
trtgaqptgkgtndkgaysyegsdgnnylftrgraaymythtpnqlgfvgdtaywdqtsr
sgftvtvnadgsnqtlnedasqrkqtpsyftslfqtggkslkikevkyitynnvmvanlt
vestqdrdvtlttaspfaaegadgateltgrvnvknnlttiyprfsannqdgsnwivsgg
kltstlslkanepqtvkiqlglianelpdstkeyearytgdlkdaaasykdsvttynkww
vdnapyvdtpednidktvvyrwwlsrfnmldanmpgntfqyptsiegvlgynnqivltsg
mfmmdtkwfrnpeysygtwlsagdtakkskagyyyyhdnpsytqyitragwdsykvhggp
stvaeeladqgaedvqgllasksepdnndnqnnndnslidwswwsmadavsfsepgrsgq
rmdradgsanmwananaaaqaykaagdtanaekmqaiadkiqkevttelwdksdnllkhk
wlndgafakykeinnyypyseglmptgnedynkalrlfedsnefpifpfftanqadkaal
nfpgsnnfsiinaqpllqvysagirnydaakngyitneqfkkllywvafahyqggdnnyp
dqnefwnednnnvgdvngdgvinnldknldaaqnggkityrswihhtqlgttnwtmvedv
agmvprednkielnpieipgwnyftvnnlryhdqdvsivwdkdgshyggpagyslyvggk
laftsdklahliydpaagtvevkddssaqvtvgaeavknvkaanqvtfnadqrvtdlfat
nvle