PDB entry 6m39

View 6m39 on RCSB PDB site
Description: cryo-em structure of sads-cov spike
Deposited on 2020-03-03, released 2020-08-26
The last revision was dated 2020-11-11, with a file datestamp of 2020-11-06.
Experiment type: EM
Resolution: 3.55 Å
R-factor: N/A
AEROSPACI score: 0.15 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Spike glycoprotein
    Species: Swine acute diarrhea syndrome coronavirus [TaxId:2032731]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Spike glycoprotein
    Species: Swine acute diarrhea syndrome coronavirus [TaxId:2032731]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Spike glycoprotein
    Species: Swine acute diarrhea syndrome coronavirus [TaxId:2032731]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: NAG

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6m39A (A:)
gcesvdfnlfntifsthrglsnttsvitgaypstnksdwscntrtghlsgsgfgiglyvq
tpreqyqydgsgaggytiavspihvtnltwelwihrkwgvnsvvtvrlcrwwqfmsfnst
shaadagptnafeclingsypthrntgymfgvtwyndlvrivfpptvlemqldglqwerv
qfnspvnaghatrfnvvkdistvlvetnsggsvfrysycadgfvnglqcklrlfdippgv
ysnseveyptalytvvhnmsacperpdsycgsnscpfkravfsncivnyttwvnpdqrdf
qhlilpngkfnpftecnglnrivdgcvpgfvlrvgrgkavnrtivtpylkpyecfgwswn
dnqdsiydwwiadfvstgafvcesnpeapktgvcvtytvekvtfqgvlyesnftfaqyyn
llyvgsqlryvrilgkvyevsscfeasydvlyrnnqsfgllyrsfdcnqlhiksarfvdr
llpshngtatvlgclfnasyapndtmvnctnplgdgfcadllgnvavrrmtfekhdttyv
apvtnerytempldhqlilteqflqttmpkfsvscetyicdvskacknllfryggfcqkv
eadirgagilldgdvsslystiaaktssvvpttdrfnvsqfflpktqssankyesrsaie
dllfskiettgpgfygdyynckknaiqdltcaqyhngilvippimdaetlgmyggiaaas
vtlgifggqagmatwsvamagrlnalgvvqnalvddvnklangfnqltasvsklalttss
alqaiqavvnqnaaqveslvsgitenfgaistnfkvisqrldkleadvqmdrlingrmnv
lqlfvtnyklkiaelrnthryvqslinecvyaqslrngfcgqglhvlslmqnapsgimff
hyslipnntitvkttpglcesdelgskcivakdgvlvsanlsywqwsprnlykpenltfa
nviavsrganyttlnktfdip

    Sequence, based on observed residues (ATOM records):
    >6m39A (A:)
gcesvdfnlfntifsthrglsnttsvitgaypstnksdwsclsgsgfgiglyvqtpryti
avspihvtnltwelwihrkwgvnsvvtvrlcrptnafeclingsypthrntgymfgvtwy
ndlvrivfpptvlemqldglqwervqfnspvnaghatrfnvvkdistvlvetnsggsvfr
ysycadgfvnglqcklrlfdippgvysnseveyptalytvvhnmsacperpdsycgsnsc
pfkravfsncivnyttwvnpdqrdfqhlilpngkfnpftecnglnrivdgcvpgfvlrvg
rgkavnrtivtpylkpyecfgwswndnqdsiydwwiadfvstgafvcesnpeapktgvcv
tytvekvtfqgvlyesnftfaqyynllyvgsqlryvrilgkvyevsscfeasydvlyrnn
qsfgllyrsfdcnqlhiksarfvdrllpshngtatvlgclfnasyapndtmvnctnplgd
gfcadllgnvavrrmtfekhdttyvapvtnerytempldhqlilteqflqttmpkfsvsc
etyicdvskacknllfryggfcqkveadirgagilldgdvsslystiaaktssvvpttdr
fnvsqfflpksrsaiedllfskiettgpgfygdyynckknaiqdltcaqyhngilvippi
mdaetlgmyggiaaasvtlgifggqagmatwsvamagrlnalgvvqnalvddvnklangf
nqltasvsklalttssalqaiqavvnqnaaqveslvsgitenfgaistnfkvisqrldkl
eadvqmdrlingrmnvlqlfvtnyklkiaelrnthryvqslinecvyaqslrngfcgqgl
hvlslmqnapsgimffhyslipnntitvkttpglcesdelgskcivakdgvlvsanlsyw
qwsprnlykpenltfanviavsrganyttlnktfdip

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6m39B (B:)
gcesvdfnlfntifsthrglsnttsvitgaypstnksdwscntrtghlsgsgfgiglyvq
tpreqyqydgsgaggytiavspihvtnltwelwihrkwgvnsvvtvrlcrwwqfmsfnst
shaadagptnafeclingsypthrntgymfgvtwyndlvrivfpptvlemqldglqwerv
qfnspvnaghatrfnvvkdistvlvetnsggsvfrysycadgfvnglqcklrlfdippgv
ysnseveyptalytvvhnmsacperpdsycgsnscpfkravfsncivnyttwvnpdqrdf
qhlilpngkfnpftecnglnrivdgcvpgfvlrvgrgkavnrtivtpylkpyecfgwswn
dnqdsiydwwiadfvstgafvcesnpeapktgvcvtytvekvtfqgvlyesnftfaqyyn
llyvgsqlryvrilgkvyevsscfeasydvlyrnnqsfgllyrsfdcnqlhiksarfvdr
llpshngtatvlgclfnasyapndtmvnctnplgdgfcadllgnvavrrmtfekhdttyv
apvtnerytempldhqlilteqflqttmpkfsvscetyicdvskacknllfryggfcqkv
eadirgagilldgdvsslystiaaktssvvpttdrfnvsqfflpktqssankyesrsaie
dllfskiettgpgfygdyynckknaiqdltcaqyhngilvippimdaetlgmyggiaaas
vtlgifggqagmatwsvamagrlnalgvvqnalvddvnklangfnqltasvsklalttss
alqaiqavvnqnaaqveslvsgitenfgaistnfkvisqrldkleadvqmdrlingrmnv
lqlfvtnyklkiaelrnthryvqslinecvyaqslrngfcgqglhvlslmqnapsgimff
hyslipnntitvkttpglcesdelgskcivakdgvlvsanlsywqwsprnlykpenltfa
nviavsrganyttlnktfdip

    Sequence, based on observed residues (ATOM records):
    >6m39B (B:)
gcesvdfnlfntifsthrglsnttsvitgaypstnksdwsclsgsgfgiglyvqtpryti
avspihvtnltwelwihrkwgvnsvvtvrlcrptnafeclingsypthrntgymfgvtwy
ndlvrivfpptvlemqldglqwervqfnspvnaghatrfnvvkdistvlvetnsggsvfr
ysycadgfvnglqcklrlfdippgvysnseveyptalytvvhnmsacperpdsycgsnsc
pfkravfsncivnyttwvnpdqrdfqhlilpngkfnpftecnglnrivdgcvpgfvlrvg
rgkavnrtivtpylkpyecfgwswndnqdsiydwwiadfvstgafvcesnpeapktgvcv
tytvekvtfqgvlyesnftfaqyynllyvgsqlryvrilgkvyevsscfeasydvlyrnn
qsfgllyrsfdcnqlhiksarfvdrllpshngtatvlgclfnasyapndtmvnctnplgd
gfcadllgnvavrrmtfekhdttyvapvtnerytempldhqlilteqflqttmpkfsvsc
etyicdvskacknllfryggfcqkveadirgagilldgdvsslystiaaktssvvpttdr
fnvsqfflpksrsaiedllfskiettgpgfygdyynckknaiqdltcaqyhngilvippi
mdaetlgmyggiaaasvtlgifggqagmatwsvamagrlnalgvvqnalvddvnklangf
nqltasvsklalttssalqaiqavvnqnaaqveslvsgitenfgaistnfkvisqrldkl
eadvqmdrlingrmnvlqlfvtnyklkiaelrnthryvqslinecvyaqslrngfcgqgl
hvlslmqnapsgimffhyslipnntitvkttpglcesdelgskcivakdgvlvsanlsyw
qwsprnlykpenltfanviavsrganyttlnktfdip

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6m39C (C:)
gcesvdfnlfntifsthrglsnttsvitgaypstnksdwscntrtghlsgsgfgiglyvq
tpreqyqydgsgaggytiavspihvtnltwelwihrkwgvnsvvtvrlcrwwqfmsfnst
shaadagptnafeclingsypthrntgymfgvtwyndlvrivfpptvlemqldglqwerv
qfnspvnaghatrfnvvkdistvlvetnsggsvfrysycadgfvnglqcklrlfdippgv
ysnseveyptalytvvhnmsacperpdsycgsnscpfkravfsncivnyttwvnpdqrdf
qhlilpngkfnpftecnglnrivdgcvpgfvlrvgrgkavnrtivtpylkpyecfgwswn
dnqdsiydwwiadfvstgafvcesnpeapktgvcvtytvekvtfqgvlyesnftfaqyyn
llyvgsqlryvrilgkvyevsscfeasydvlyrnnqsfgllyrsfdcnqlhiksarfvdr
llpshngtatvlgclfnasyapndtmvnctnplgdgfcadllgnvavrrmtfekhdttyv
apvtnerytempldhqlilteqflqttmpkfsvscetyicdvskacknllfryggfcqkv
eadirgagilldgdvsslystiaaktssvvpttdrfnvsqfflpktqssankyesrsaie
dllfskiettgpgfygdyynckknaiqdltcaqyhngilvippimdaetlgmyggiaaas
vtlgifggqagmatwsvamagrlnalgvvqnalvddvnklangfnqltasvsklalttss
alqaiqavvnqnaaqveslvsgitenfgaistnfkvisqrldkleadvqmdrlingrmnv
lqlfvtnyklkiaelrnthryvqslinecvyaqslrngfcgqglhvlslmqnapsgimff
hyslipnntitvkttpglcesdelgskcivakdgvlvsanlsywqwsprnlykpenltfa
nviavsrganyttlnktfdip

    Sequence, based on observed residues (ATOM records):
    >6m39C (C:)
gcesvdfnlfntifsthrglsnttsvitgaypstnksdwsclsgsgfgiglyvqtpryti
avspihvtnltwelwihrkwgvnsvvtvrlcrptnafeclingsypthrntgymfgvtwy
ndlvrivfpptvlemqldglqwervqfnspvnaghatrfnvvkdistvlvetnsggsvfr
ysycadgfvnglqcklrlfdippgvysnseveyptalytvvhnmsacperpdsycgsnsc
pfkravfsncivnyttwvnpdqrdfqhlilpngkfnpftecnglnrivdgcvpgfvlrvg
rgkavnrtivtpylkpyecfgwswndnqdsiydwwiadfvstgafvcesnpeapktgvcv
tytvekvtfqgvlyesnftfaqyynllyvgsqlryvrilgkvyevsscfeasydvlyrnn
qsfgllyrsfdcnqlhiksarfvdrllpshngtatvlgclfnasyapndtmvnctnplgd
gfcadllgnvavrrmtfekhdttyvapvtnerytempldhqlilteqflqttmpkfsvsc
etyicdvskacknllfryggfcqkveadirgagilldgdvsslystiaaktssvvpttdr
fnvsqfflpksrsaiedllfskiettgpgfygdyynckknaiqdltcaqyhngilvippi
mdaetlgmyggiaaasvtlgifggqagmatwsvamagrlnalgvvqnalvddvnklangf
nqltasvsklalttssalqaiqavvnqnaaqveslvsgitenfgaistnfkvisqrldkl
eadvqmdrlingrmnvlqlfvtnyklkiaelrnthryvqslinecvyaqslrngfcgqgl
hvlslmqnapsgimffhyslipnntitvkttpglcesdelgskcivakdgvlvsanlsyw
qwsprnlykpenltfanviavsrganyttlnktfdip