PDB entry 6lz4

View 6lz4 on RCSB PDB site
Description: crystal structure of pmab-1 fv-clasp fragment with its antigen peptide
Deposited on 2020-02-18, released 2020-05-20
The last revision was dated 2020-11-11, with a file datestamp of 2020-11-06.
Experiment type: XRAY
Resolution: 2.49 Å
R-factor: N/A
AEROSPACI score: 0.27 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: PMab-1 VH(S112C)-SARAH Chimera
    Species: Rattus norvegicus [TaxId:10116]
    Database cross-references and differences (RAF-indexed):
    • PDB 6LZ4 (Start-167)
  • Chain 'B':
    Compound: PMab-1 VL-SARAH(S37C) Chimera
    Species: Rattus norvegicus [TaxId:10116]
    Database cross-references and differences (RAF-indexed):
    • PDB 6LZ4 (0-End)
  • Chain 'C':
    Compound: MAP peptide
    Species: MUS MUSCULUS, synthetic [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6LZ4 (0-End)
  • Chain 'D':
    Compound: PMab-1 VH(S112C)-SARAH Chimera
    Species: Rattus norvegicus [TaxId:10116]
    Database cross-references and differences (RAF-indexed):
    • PDB 6LZ4
  • Chain 'E':
    Compound: PMab-1 VL-SARAH(S37C) Chimera
    Species: Rattus norvegicus [TaxId:10116]
    Database cross-references and differences (RAF-indexed):
    • PDB 6LZ4 (Start-162)
  • Chain 'F':
    Compound: MAP peptide
    Species: MUS MUSCULUS, synthetic [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6LZ4 (0-End)

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6lz4A (A:)
mqiqlqqsgtvlvkpassvkisckasgysftshymhwirqqpgqglewigwispeqgntk
ynqkfdgkatltadksssiaymqlssltsedsavyfcvswedwsaywgqgtlvtvcsgsd
yeflkswtvedlqkrllaldpmmeqeieeirqkyqskrqpildaieak

    Sequence, based on observed residues (ATOM records):
    >6lz4A (A:)
qiqlqqsgtvlvkpassvkisckasgysftshymhwirqqpgqglewigwispeqgntky
nqkfdgkatltadksssiaymqlssltsedsavyfcvswedwsaywgqgtlvtvcseflk
swtvedlqkrllaldpmmeqeieeirqkyqskrqpildaieak

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6lz4B (B:)
mdivltqspaltvslgqratiscktnqnvdyygnsyvhwyqqkpgqkpklliylasnlas
giparfsgrgsgtdftltidpveaadtatyycqqsrdlpntfgagtklelkrgsdyeflk
swtvedlqkrllaldpmmeqeieeirqkyqckrqpildaieak

    Sequence, based on observed residues (ATOM records):
    >6lz4B (B:)
mdivltqspaltvslgqratiscktnqnvdyygnsyvhwyqqkpgqkpklliylasnlas
giparfsgrgsgtdftltidpveaadtatyycqqsrdlpntfgagtklelkrgsdyeflk
swtvedlqkrllaldpmmeqeieeirqkyqckrqpildaiea

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6lz4C (C:)
gdgmvppgiedkit

    Sequence, based on observed residues (ATOM records):
    >6lz4C (C:)
gdgmvppg

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6lz4D (D:)
mqiqlqqsgtvlvkpassvkisckasgysftshymhwirqqpgqglewigwispeqgntk
ynqkfdgkatltadksssiaymqlssltsedsavyfcvswedwsaywgqgtlvtvcsgsd
yeflkswtvedlqkrllaldpmmeqeieeirqkyqskrqpildaieak

    Sequence, based on observed residues (ATOM records):
    >6lz4D (D:)
qiqlqqsgtvlvkpassvkisckasgysftshymhwirqqpgqglewigwispeqgntky
nqkfdgkatltadksssiaymqlssltsedsavyfcvswedwsaywgqgtlvtvcsyefl
kswtvedlqkrllaldpmmeqeieeirqkyqskrqpildaiea

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6lz4E (E:)
mdivltqspaltvslgqratiscktnqnvdyygnsyvhwyqqkpgqkpklliylasnlas
giparfsgrgsgtdftltidpveaadtatyycqqsrdlpntfgagtklelkrgsdyeflk
swtvedlqkrllaldpmmeqeieeirqkyqckrqpildaieak

    Sequence, based on observed residues (ATOM records):
    >6lz4E (E:)
divltqspaltvslgqratiscktnqnvdyygnsyvhwyqqkpgqkpklliylasnlasg
iparfsgrgsgtdftltidpveaadtatyycqqsrdlpntfgagtkleltvedlqkrlla
ldpmmeqeieeirqkyqckrqpildaieak

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6lz4F (F:)
gdgmvppgiedkit

    Sequence, based on observed residues (ATOM records):
    >6lz4F (F:)
gdgmvpp