PDB entry 6lyu

View 6lyu on RCSB PDB site
Description: structure of the bam complex
Deposited on 2020-02-15, released 2021-01-13
The last revision was dated 2021-01-13, with a file datestamp of 2021-01-08.
Experiment type: EM
Resolution: 4.2 Å
R-factor: N/A
AEROSPACI score: 0.03 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Outer membrane protein assembly factor BamA
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: bamA, yaeT, yzzN, yzzY, b0177, JW0172
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Outer membrane protein assembly factor BamB
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: bamB, yfgL, b2512, JW2496
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Outer membrane protein assembly factor BamC
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: bamC, dapX, nlpB, b2477, JW2462
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Outer membrane protein assembly factor BamD
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: bamD, yfiO, b2595, JW2577
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Outer membrane protein assembly factor BamE
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: bamE, smpA, b2617, JW2598
    Database cross-references and differences (RAF-indexed):

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6lyuA (A:)
mamkklliasllfssatvygaegfvvkdihfeglqrvavgaallsmpvrtgdtvndedis
ntiralfatgnfedvrvlrdgdtllvqvkerptiasitfsgnksvkddmlkqnleasgvr
vgesldrttiadiekgledfyysvgkysasvkavvtplprnrvdlklvfqegvsaeiqqi
nivgnhafttdelishfqlrdevpwwnvvgdrkyqkqklagdletlrsyyldrgyarfni
dstqvsltpdkkgiyvtvnitegdqyklsgvevsgnlaghsaeieqltkiepgelyngtk
vtkmeddikkllgrygyayprvqsmpeindadktvklrvnvdagnrfyvrkirfegndts
kdavlrremrqmegawlgsdlvdqgkerlnrlgffetvdtdtqrvpgspdqvdvvykvke
rntgsfnfgigygtesgvsfqagvqqdnwlgtgyavgingtkndyqtyaelsvtnpyftv
dgvslggrlfyndfqaddadlsdytnksygtdvtlgfpineynslraglgyvhnslsnmq
pqvamwrylysmgehpstsdqdnsfktddftfnygwtynkldrgyfptdgsrvnltgkvt
ipgsdneyykvtldtatyvpidddhkwvvlgrtrwgygdglggkempfyenfyaggsstv
rgfqsntigpkavyfphqasnydpdydyecatqdgakdlcksddavggnamavaslefit
ptpfisdkyansvrtsffwdmgtvwdtnwdssqysgypdysdpsnirmsagialqwmspl
gplvfsyaqpfkkydgdkaeqfqfnigktw

    Sequence, based on observed residues (ATOM records):
    >6lyuA (A:)
erptiasitfsgnksvkddmlkqnleasgvrvgesldrttiadiekgledfyysvgkysa
svkavvtplprnrvdlklvfqegvsaeiqqinivgnhafttdelishfqlrdevpwwnvv
gdrkyqkqklagdletlrsyyldrgyarfnidstqvsltpdkkgiyvtvnitegdqykls
gvevsgnlaghsaeieqltkiepgelyngtkvtkmeddikkllgrygyayprvqsmpein
dadktvklrvnvdagnrfyvrkirfegndtskdavlrremrqmegawlgsdlvdqgkerl
nrlgffetvdtdtqrvpgspdqvdvvykvkerntgsfnfgigygtesgvsfqagvqqdnw
lgtgyavgingtkndyqtyaelsvtnpyftvdgvslggrlfyndfqaddadlsdytnksy
gtdvtlgfpineynslraglgyvhnslsnmqpqvamwrylysmgehpstsdqdnsfktdd
ftfnygwtynkldrgyfptdgsrvnltgkvtipgsdneyykvtldtatyvpidddhkwvv
lgrtrwgygdglggkempfyenfyaggsstvrgfqsntigpkavyfphqasnydpdydye
catqdgakdlcksddavggnamavaslefitptpfsvrtsffwdmgtvwdtnwdssqysg
ypdysdpsnirmsagialqwmsplgplvfsyaqpfkkydgdkaeqfqfni

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6lyuB (B:)
mqlrklllpgllsvtllsgcslfnseedvvkmsplptvenqftpttawstsvgsgignfy
snlhpaladnvvyaadraglvkalnaddgkeiwsvslaekdgwfskepallsggvtvsgg
hvyigsekaqvyalntsdgtvawqtkvagealsrpvvsdglvlihtsngqlqalneadga
vkwtvnldmpslslrgesapttafgaavvggdngrvsavlmeqgqmiwqqrisqatgste
idrlsdvdttpvvvngvvfalayngnltaldlrsgqimwkrelgsvndfivdgnriylvd
qndrvmaltidggvtlwtqsdllhrlltspvlyngnlvvgdsegylhwinvedgrfvaqq
kvdssgfqtepvaadgklliqakdgtvysitrwshpqfek

    Sequence, based on observed residues (ATOM records):
    >6lyuB (B:)
eedvvkmsplptvenqftpttawstsvgsgignfysnlhpaladnvvyaadraglvkaln
addgkeiwsvslaekdgwfskepallsggvtvsgghvyigsekaqvyalntsdgtvawqt
kvagealsrpvvsdglvlihtsngqlqalneadgavkwtvnldmpslslrgesapttafg
aavvggdngrvsavlmeqgqmiwqqrisqatgsteidrlsdvdttpvvvngvvfalayng
nltaldlrsgqimwkrelgsvndfivdgnriylvdqndrvmaltidggvtlwtqsdllhr
lltspvlyngnlvvgdsegylhwinvedgrfvaqqkvdssgfqtepvaadgklliqakdg
tvysitr

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6lyuC (C:)
maysvqksrlakvagvslvlllaacssdsrykrqvsgdeayleaaplaelhapagmilpv
tsgdyaipvtngsgavgkaldirppaqplalvsgartqftgdtasllvengrgntlwpqv
vsvlqaknytitqrddagqtlttdwvqwnrldedeqyrgryqisvkpqgyqqavtvklln
leqagkpvadaasmqrystemmnvisagldksatdaanaaqnrasttmdvqsaaddtglp
mlvvrgpfnvvwqrlpaalekvgmkvtdstrsqgnmavtykplsdsdwqelgasdpglas
gdyklqvgdldnrsslqfidpkghtltqsqndalvavfqaafsk

    Sequence, based on observed residues (ATOM records):
    >6lyuC (C:)
rqvsgdeayleaaplaelhapagmilpvtsgdyaipsgavgkaldirp

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6lyuD (D:)
mtrmkylvaaatlslflagcsgskeevpdnppneiyataqqklqdgnwrqaitqlealdn
rypfgpysqqvqldliyayyknadlplaqaaidrfirlnpthpnidyvmymrgltnmald
dsalqgffgvdrsdrdpqharaafsdfsklvrgypnsqyttdatkrlvflkdrlakyeys
vaeyytergawvavvnrvegmlrdypdtqatrdalplmenayrqmqmnaqaekvakiiaa
nssnt

    Sequence, based on observed residues (ATOM records):
    >6lyuD (D:)
evpdnppneiyataqqklqdgnwrqaitqlealdnrypfgpysqqvqldliyayyknadl
plaqaaidrfirlnpthpnidyvmymrgltnmalddsalqgffgvdrsdrdpqharaafs
dfsklvrgypnsqyttdatkrlvflkdrlakyeysvaeyytergawvavvnrvegmlrdy
pdtqatrdalplmenayrqmqmnaqaekvakiiaanss

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6lyuE (E:)
mrcktltaaaavllmltagcstlervvyrpdinqgnyltandvskirvgmtqqqvayalg
tplmsdpfgtntwfyvfrqqpghegvtqqtltltfnssgvltnidnkpalsgnhhhhhh

    Sequence, based on observed residues (ATOM records):
    >6lyuE (E:)
ervvyrpdinqgnyltandvskirvgmtqqqvayalgtplmsdpfgtntwfyvfrqqpgh
egvtqqtltltfnssgvltnidnkpal