PDB entry 6lyq

View 6lyq on RCSB PDB site
Description: structure of the bam complex
Deposited on 2020-02-15, released 2021-01-06
The last revision was dated 2021-01-27, with a file datestamp of 2021-01-22.
Experiment type: XRAY
Resolution: 3.19 Å
R-factor: N/A
AEROSPACI score: 0.17 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Outer membrane protein assembly factor BamA
    Species: Escherichia coli K-12 [TaxId:83333]
    Gene: bamA, yaeT, yzzN, yzzY, b0177, JW0172
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0A940
      • conflict (759)
  • Chain 'B':
    Compound: Outer membrane protein assembly factor BamB
    Species: Escherichia coli K-12 [TaxId:83333]
    Gene: bamB, yfgL, b2512, JW2496
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Outer membrane protein assembly factor BamC
    Species: Escherichia coli K-12 [TaxId:83333]
    Gene: bamC, dapX, nlpB, b2477, JW2462
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Outer membrane protein assembly factor BamD
    Species: Escherichia coli K-12 [TaxId:83333]
    Gene: bamD, yfiO, b2595, JW2577
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Outer membrane protein assembly factor BamE
    Species: Escherichia coli K-12 [TaxId:83333]
    Gene: bamE, smpA, b2617, JW2598
    Database cross-references and differences (RAF-indexed):
  • Chain 'O':
    Compound: Peptide from Phospholipase A1
    Species: Escherichia coli K-12 [TaxId:83333]
    Gene: pldA, b3821, JW3794
    Database cross-references and differences (RAF-indexed):

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6lyqA (A:)
mamkklliasllfssatvygaegfvvkdihfeglqrvavgaallsmpvrtgdtvndedis
ntiralfatgnfedvrvlrdgdtllvqvkerptiasitfsgnksvkddmlkqnleasgvr
vgesldrttiadiekgledfyysvgkysasvkavvtplprnrvdlklvfqegvsaeiqqi
nivgnhafttdelishfqlrdevpwwnvvgdrkyqkqklagdletlrsyyldrgyarfni
dstqvsltpdkkgiyvtvnitegdqyklsgvevsgnlaghsaeieqltkiepgelyngtk
vtkmeddikkllgrygyayprvqsmpeindadktvklrvnvdagnrfyvrkirfegndts
kdavlrremrqmegawlgsdlvdqgkerlnrlgffetvdtdtqrvpgspdqvdvvykvke
rntgsfnfgigygtesgvsfqagvqqdnwlgtgyavgingtkndyqtyaelsvtnpyftv
dgvslggrlfyndfqaddadlsdytnksygtdvtlgfpineynslraglgyvhnslsnmq
pqvamwrylysmgehpstsdqdnsfktddftfnygwtynkldrgyfptdgsrvnltgkvt
ipgsdneyykvtldtatyvpidddhkwvvlgrtrwgygdglggkempfyenfyaggsstv
rgfqsntigpkavyfphqasnydpdydyecatqdgakdlcksddavggnamavaslefit
ptpfisdkyansvrtsffwdmgtvwdtnwdssqysgypdwsdpsnirmsagialqwmspl
gplvfsyaqpfkkydgdkaeqfqfnigktw

    Sequence, based on observed residues (ATOM records):
    >6lyqA (A:)
gfvvkdihfeglqrvavgaallsmpvrtgdtvndedisntiralfatgnfedvrvlrdgd
tllvqvkerptiasitfsgnksvkddmlkqnleasgvrvgesldrttiadiekgledfyy
svgkysasvkavvtplprnrvdlklvfqegvsaeiqqinivgnhafttdelishfqlrde
vpwwnvvgdrkyqkqklagdletlrsyyldrgyarfnidstqvsltpdkkgiyvtvnite
gdqyklsgvevsgnlaghsaeieqltkiepgelyngtkvtkmeddikkllgrygyayprv
qsmpeindadktvklrvnvdagnrfyvrkirfegndtskdavlrremrqmegawlgsdlv
dqgkerlnrlgffetvdtdtqrvpgspdqvdvvykvkerntgsfnfgigygtesgvsfqa
gvqqdnwlgtgyavgingtkndyqtyaelsvtnpyftvdgvslggrlfyndfqaddadls
dytnksygtdvtlgfpineynslraglgyvhnslsnmqpqvamwrylysmgehpstsdqd
nsfktddftfnygwtynkldrgyfptdgsrvnltgkvtipgsdneyykvtldtatyvpid
ddhkwvvlgrtrwgygdglggkempfyenfyaggsstvrgfqsntigpkavyfphqasny
dpdydyecatqdgakdlcksddavggnamavaslefitptpfisdkyansvrtsffwdmg
tvwdtnwdssqysgypdwsdpsnirmsagialqwmsplgplvfsyaqpfkkydgdkaeqf
qfnigkt

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6lyqB (B:)
mqlrklllpgllsvtllsgcslfnseedvvkmsplptvenqftpttawstsvgsgignfy
snlhpaladnvvyaadraglvkalnaddgkeiwsvslaekdgwfskepallsggvtvsgg
hvyigsekaqvyalntsdgtvawqtkvagealsrpvvsdglvlihtsngqlqalneadga
vkwtvnldmpslslrgesapttafgaavvggdngrvsavlmeqgqmiwqqrisqatgste
idrlsdvdttpvvvngvvfalayngnltaldlrsgqimwkrelgsvndfivdgnriylvd
qndrvmaltidggvtlwtqsdllhrlltspvlyngnlvvgdsegylhwinvedgrfvaqq
kvdssgfqtepvaadgklliqakdgtvysitrwshpqfek

    Sequence, based on observed residues (ATOM records):
    >6lyqB (B:)
eedvvkmsplptvenqftpttawstsvgsgignfysnlhpaladnvvyaadraglvkaln
addgkeiwsvslaeepallsggvtvsgghvyigsekaqvyalntsdgtvawqtkvageal
srpvvsdglvlihtsngqlqalneadgavkwtvnldmpslslrgesapttafgaavvggd
ngrvsavlmeqgqmiwqqrisqatgsteidrlstpvvvngvvfalayngnltaldlrsgq
imwkrelgsvndfivdgnriylvdqndrvmaltidggvtlwtqsdllhrlltspvlyngn
lvvgdsegylhwinvedgrfvaqqkvdssgfqtepvaadgklliqakdgtvysitr

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6lyqC (C:)
maysvqksrlakvagvslvlllaacssdsrykrqvsgdeayleaaplaelhapagmilpv
tsgdyaipvtngsgavgkaldirppaqplalvsgartqftgdtasllvengrgntlwpqv
vsvlqaknytitqrddagqtlttdwvqwnrldedeqyrgryqisvkpqgyqqavtvklln
leqagkpvadaasmqrystemmnvisagldksatdaanaaqnrasttmdvqsaaddtglp
mlvvrgpfnvvwqrlpaalekvgmkvtdstrsqgnmavtykplsdsdwqelgasdpglas
gdyklqvgdldnrsslqfidpkghtltqsqndalvavfqaafsk

    Sequence, based on observed residues (ATOM records):
    >6lyqC (C:)
rqvsgdeayleaaplaelhapagmilpvtsgdyaipvtngsgavgkaldirppaqp

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6lyqD (D:)
mtrmkylvaaatlslflagcsgskeevpdnppneiyataqqklqdgnwrqaitqlealdn
rypfgpysqqvqldliyayyknadlplaqaaidrfirlnpthpnidyvmymrgltnmald
dsalqgffgvdrsdrdpqharaafsdfsklvrgypnsqyttdatkrlvflkdrlakyeys
vaeyytergawvavvnrvegmlrdypdtqatrdalplmenayrqmqmnaqaekvakiiaa
nssnt

    Sequence, based on observed residues (ATOM records):
    >6lyqD (D:)
evpdnppneiyataqqklqdgnwrqaitqlealdnrypfgpysqqvqldliyayyknadl
plaqaaidrfirlnpthpnidyvmymrgltnmalddsrsdrdpqharaafsdfsklvrgy
pnsqyttdatkrlvflkdrlakyeysvaeyytergawvavvnrvegmlrdypdtqatrda
lplmenayrqmqmnaqaekvakiiaans

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6lyqE (E:)
mrcktltaaaavllmltagcstlervvyrpdinqgnyltandvskirvgmtqqqvayalg
tplmsdpfgtntwfyvfrqqpghegvtqqtltltfnssgvltnidnkpalsgnhhhhhh

    Sequence, based on observed residues (ATOM records):
    >6lyqE (E:)
ervvyrpdinqgnyltandvskirvgmtqqqvayalgtplmsdpfgtntwfyvfrqqpgh
egvtqqtltltfnssgvltnidnkpals

  • Chain 'O':
    Sequence, based on SEQRES records:
    >6lyqO (O:)
fnqtrvgvgvmlndlf

    Sequence, based on observed residues (ATOM records):
    >6lyqO (O:)
trvgvgvmlndlf