PDB entry 6lyp

View 6lyp on RCSB PDB site
Description: cryo-em structure of atmsl1 wild type
Deposited on 2020-02-15, released 2020-04-15
The last revision was dated 2020-04-15, with a file datestamp of 2020-04-10.
Experiment type: EM
Resolution: 3.3 Å
R-factor: N/A
AEROSPACI score: 0.11 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Mechanosensitive ion channel protein 1, mitochondrial
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: MSL1, At4g00290, A_IG005I10.9, F5I10.9
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8VZL4
      • engineered mutation (233-234)
  • Chain 'B':
    Compound: Mechanosensitive ion channel protein 1, mitochondrial
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: MSL1, At4g00290, A_IG005I10.9, F5I10.9
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8VZL4
      • engineered mutation (233-234)
  • Chain 'C':
    Compound: Mechanosensitive ion channel protein 1, mitochondrial
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: MSL1, At4g00290, A_IG005I10.9, F5I10.9
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8VZL4
      • engineered mutation (233-234)
  • Chain 'D':
    Compound: Mechanosensitive ion channel protein 1, mitochondrial
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: MSL1, At4g00290, A_IG005I10.9, F5I10.9
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8VZL4
      • engineered mutation (233-234)
  • Chain 'E':
    Compound: Mechanosensitive ion channel protein 1, mitochondrial
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: MSL1, At4g00290, A_IG005I10.9, F5I10.9
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8VZL4
      • engineered mutation (233-234)
  • Chain 'F':
    Compound: Mechanosensitive ion channel protein 1, mitochondrial
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: MSL1, At4g00290, A_IG005I10.9, F5I10.9
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8VZL4
      • engineered mutation (233-234)
  • Chain 'G':
    Compound: Mechanosensitive ion channel protein 1, mitochondrial
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: MSL1, At4g00290, A_IG005I10.9, F5I10.9
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8VZL4
      • engineered mutation (233-234)

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6lypA (A:)
magvrlsllksiqrsikphatakscsgllnsharaftcgnlldgpkaspsmisfssnirl
hndakpfnylghssyarafssksddfgsivasgvtgsgdgngngndwvekakdvlqtsvd
avtetakktkdvsdemiphvqqfldsnpylkdvivpvsltmtgtlfawvvmprilrrfht
yamqssakllpvgfsnedvpyeksfwgaledparylvtfiafaqiaamvapttaiaqyfs
ptvkgavilslvwflyrwktnvitrmlsaksfggldrekvltldkvssvglfaiglmasa
eacgvavqsiltvggvggvatafaardilgnvlsglsmqfsrpfsmgdtikagsvegqvi
emgltttsllnaekfpvlvpnslfssqvivnksraqwraiaskiplqiddldmipqisne
ikemlrsntkvflgkeaphcylsrveksfaeltigcnlirmgkeelyntqqevlleavki
ikkhgvslgttwdnstl

    Sequence, based on observed residues (ATOM records):
    >6lypA (A:)
fwgaledparylvtfiafaqiaamvapttaiaqyfsptvkgavilslvwflyrwktnvit
rmlsaksfggldrekvltldkvssvglfaiglmasaeacgvavqsiltvggvggvatafa
ardilgnvlsglsmqfsrpfsmgdtikagsvegqviemgltttsllnaekfpvlvpnslf
ssqvivnksraqwraiaskiplqiddldmipqisneikemlrsntkvflgkeaphcylsr
veksfaeltigcnlirmgkeelyntqqevlleavkiikkhgvslgtt

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6lypB (B:)
magvrlsllksiqrsikphatakscsgllnsharaftcgnlldgpkaspsmisfssnirl
hndakpfnylghssyarafssksddfgsivasgvtgsgdgngngndwvekakdvlqtsvd
avtetakktkdvsdemiphvqqfldsnpylkdvivpvsltmtgtlfawvvmprilrrfht
yamqssakllpvgfsnedvpyeksfwgaledparylvtfiafaqiaamvapttaiaqyfs
ptvkgavilslvwflyrwktnvitrmlsaksfggldrekvltldkvssvglfaiglmasa
eacgvavqsiltvggvggvatafaardilgnvlsglsmqfsrpfsmgdtikagsvegqvi
emgltttsllnaekfpvlvpnslfssqvivnksraqwraiaskiplqiddldmipqisne
ikemlrsntkvflgkeaphcylsrveksfaeltigcnlirmgkeelyntqqevlleavki
ikkhgvslgttwdnstl

    Sequence, based on observed residues (ATOM records):
    >6lypB (B:)
fwgaledparylvtfiafaqiaamvapttaiaqyfsptvkgavilslvwflyrwktnvit
rmlsaksfggldrekvltldkvssvglfaiglmasaeacgvavqsiltvggvggvatafa
ardilgnvlsglsmqfsrpfsmgdtikagsvegqviemgltttsllnaekfpvlvpnslf
ssqvivnksraqwraiaskiplqiddldmipqisneikemlrsntkvflgkeaphcylsr
veksfaeltigcnlirmgkeelyntqqevlleavkiikkhgvslgtt

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6lypC (C:)
magvrlsllksiqrsikphatakscsgllnsharaftcgnlldgpkaspsmisfssnirl
hndakpfnylghssyarafssksddfgsivasgvtgsgdgngngndwvekakdvlqtsvd
avtetakktkdvsdemiphvqqfldsnpylkdvivpvsltmtgtlfawvvmprilrrfht
yamqssakllpvgfsnedvpyeksfwgaledparylvtfiafaqiaamvapttaiaqyfs
ptvkgavilslvwflyrwktnvitrmlsaksfggldrekvltldkvssvglfaiglmasa
eacgvavqsiltvggvggvatafaardilgnvlsglsmqfsrpfsmgdtikagsvegqvi
emgltttsllnaekfpvlvpnslfssqvivnksraqwraiaskiplqiddldmipqisne
ikemlrsntkvflgkeaphcylsrveksfaeltigcnlirmgkeelyntqqevlleavki
ikkhgvslgttwdnstl

    Sequence, based on observed residues (ATOM records):
    >6lypC (C:)
fwgaledparylvtfiafaqiaamvapttaiaqyfsptvkgavilslvwflyrwktnvit
rmlsaksfggldrekvltldkvssvglfaiglmasaeacgvavqsiltvggvggvatafa
ardilgnvlsglsmqfsrpfsmgdtikagsvegqviemgltttsllnaekfpvlvpnslf
ssqvivnksraqwraiaskiplqiddldmipqisneikemlrsntkvflgkeaphcylsr
veksfaeltigcnlirmgkeelyntqqevlleavkiikkhgvslgtt

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6lypD (D:)
magvrlsllksiqrsikphatakscsgllnsharaftcgnlldgpkaspsmisfssnirl
hndakpfnylghssyarafssksddfgsivasgvtgsgdgngngndwvekakdvlqtsvd
avtetakktkdvsdemiphvqqfldsnpylkdvivpvsltmtgtlfawvvmprilrrfht
yamqssakllpvgfsnedvpyeksfwgaledparylvtfiafaqiaamvapttaiaqyfs
ptvkgavilslvwflyrwktnvitrmlsaksfggldrekvltldkvssvglfaiglmasa
eacgvavqsiltvggvggvatafaardilgnvlsglsmqfsrpfsmgdtikagsvegqvi
emgltttsllnaekfpvlvpnslfssqvivnksraqwraiaskiplqiddldmipqisne
ikemlrsntkvflgkeaphcylsrveksfaeltigcnlirmgkeelyntqqevlleavki
ikkhgvslgttwdnstl

    Sequence, based on observed residues (ATOM records):
    >6lypD (D:)
fwgaledparylvtfiafaqiaamvapttaiaqyfsptvkgavilslvwflyrwktnvit
rmlsaksfggldrekvltldkvssvglfaiglmasaeacgvavqsiltvggvggvatafa
ardilgnvlsglsmqfsrpfsmgdtikagsvegqviemgltttsllnaekfpvlvpnslf
ssqvivnksraqwraiaskiplqiddldmipqisneikemlrsntkvflgkeaphcylsr
veksfaeltigcnlirmgkeelyntqqevlleavkiikkhgvslgtt

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6lypE (E:)
magvrlsllksiqrsikphatakscsgllnsharaftcgnlldgpkaspsmisfssnirl
hndakpfnylghssyarafssksddfgsivasgvtgsgdgngngndwvekakdvlqtsvd
avtetakktkdvsdemiphvqqfldsnpylkdvivpvsltmtgtlfawvvmprilrrfht
yamqssakllpvgfsnedvpyeksfwgaledparylvtfiafaqiaamvapttaiaqyfs
ptvkgavilslvwflyrwktnvitrmlsaksfggldrekvltldkvssvglfaiglmasa
eacgvavqsiltvggvggvatafaardilgnvlsglsmqfsrpfsmgdtikagsvegqvi
emgltttsllnaekfpvlvpnslfssqvivnksraqwraiaskiplqiddldmipqisne
ikemlrsntkvflgkeaphcylsrveksfaeltigcnlirmgkeelyntqqevlleavki
ikkhgvslgttwdnstl

    Sequence, based on observed residues (ATOM records):
    >6lypE (E:)
fwgaledparylvtfiafaqiaamvapttaiaqyfsptvkgavilslvwflyrwktnvit
rmlsaksfggldrekvltldkvssvglfaiglmasaeacgvavqsiltvggvggvatafa
ardilgnvlsglsmqfsrpfsmgdtikagsvegqviemgltttsllnaekfpvlvpnslf
ssqvivnksraqwraiaskiplqiddldmipqisneikemlrsntkvflgkeaphcylsr
veksfaeltigcnlirmgkeelyntqqevlleavkiikkhgvslgtt

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6lypF (F:)
magvrlsllksiqrsikphatakscsgllnsharaftcgnlldgpkaspsmisfssnirl
hndakpfnylghssyarafssksddfgsivasgvtgsgdgngngndwvekakdvlqtsvd
avtetakktkdvsdemiphvqqfldsnpylkdvivpvsltmtgtlfawvvmprilrrfht
yamqssakllpvgfsnedvpyeksfwgaledparylvtfiafaqiaamvapttaiaqyfs
ptvkgavilslvwflyrwktnvitrmlsaksfggldrekvltldkvssvglfaiglmasa
eacgvavqsiltvggvggvatafaardilgnvlsglsmqfsrpfsmgdtikagsvegqvi
emgltttsllnaekfpvlvpnslfssqvivnksraqwraiaskiplqiddldmipqisne
ikemlrsntkvflgkeaphcylsrveksfaeltigcnlirmgkeelyntqqevlleavki
ikkhgvslgttwdnstl

    Sequence, based on observed residues (ATOM records):
    >6lypF (F:)
fwgaledparylvtfiafaqiaamvapttaiaqyfsptvkgavilslvwflyrwktnvit
rmlsaksfggldrekvltldkvssvglfaiglmasaeacgvavqsiltvggvggvatafa
ardilgnvlsglsmqfsrpfsmgdtikagsvegqviemgltttsllnaekfpvlvpnslf
ssqvivnksraqwraiaskiplqiddldmipqisneikemlrsntkvflgkeaphcylsr
veksfaeltigcnlirmgkeelyntqqevlleavkiikkhgvslgtt

  • Chain 'G':
    Sequence, based on SEQRES records:
    >6lypG (G:)
magvrlsllksiqrsikphatakscsgllnsharaftcgnlldgpkaspsmisfssnirl
hndakpfnylghssyarafssksddfgsivasgvtgsgdgngngndwvekakdvlqtsvd
avtetakktkdvsdemiphvqqfldsnpylkdvivpvsltmtgtlfawvvmprilrrfht
yamqssakllpvgfsnedvpyeksfwgaledparylvtfiafaqiaamvapttaiaqyfs
ptvkgavilslvwflyrwktnvitrmlsaksfggldrekvltldkvssvglfaiglmasa
eacgvavqsiltvggvggvatafaardilgnvlsglsmqfsrpfsmgdtikagsvegqvi
emgltttsllnaekfpvlvpnslfssqvivnksraqwraiaskiplqiddldmipqisne
ikemlrsntkvflgkeaphcylsrveksfaeltigcnlirmgkeelyntqqevlleavki
ikkhgvslgttwdnstl

    Sequence, based on observed residues (ATOM records):
    >6lypG (G:)
fwgaledparylvtfiafaqiaamvapttaiaqyfsptvkgavilslvwflyrwktnvit
rmlsaksfggldrekvltldkvssvglfaiglmasaeacgvavqsiltvggvggvatafa
ardilgnvlsglsmqfsrpfsmgdtikagsvegqviemgltttsllnaekfpvlvpnslf
ssqvivnksraqwraiaskiplqiddldmipqisneikemlrsntkvflgkeaphcylsr
veksfaeltigcnlirmgkeelyntqqevlleavkiikkhgvslgtt