PDB entry 6lyh

View 6lyh on RCSB PDB site
Description: Crystal structure of tea N9-methyltransferase CkTcS in complex with SAH and 1,3,7-trimethyluric acid
Class: transferase
Keywords: N-methyltransferase, CkTcS, TRANSFERASE
Deposited on 2020-02-14, released 2020-03-04
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-04-01, with a file datestamp of 2020-03-27.
Experiment type: XRAY
Resolution: 3.15 Å
R-factor: N/A
AEROSPACI score: 0.11 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: N-methyltransferase CkTcS
    Species: Camellia sinensis var. assamica [TaxId:261999]
    Database cross-references and differences (RAF-indexed):
    • PDB 6LYH
    Domains in SCOPe 2.08: d6lyha_
  • Chain 'B':
    Compound: N-methyltransferase CkTcS
    Species: Camellia sinensis var. assamica [TaxId:261999]
    Database cross-references and differences (RAF-indexed):
    • PDB 6LYH
    Domains in SCOPe 2.08: d6lyhb_
  • Chain 'C':
    Compound: N-methyltransferase CkTcS
    Species: Camellia sinensis var. assamica [TaxId:261999]
    Database cross-references and differences (RAF-indexed):
    • PDB 6LYH
    Domains in SCOPe 2.08: d6lyhc_
  • Chain 'D':
    Compound: N-methyltransferase CkTcS
    Species: Camellia sinensis var. assamica [TaxId:261999]
    Database cross-references and differences (RAF-indexed):
    • PDB 6LYH
    Domains in SCOPe 2.08: d6lyhd_
  • Chain 'E':
    Compound: N-methyltransferase CkTcS
    Species: Camellia sinensis var. assamica [TaxId:261999]
    Database cross-references and differences (RAF-indexed):
    • PDB 6LYH
    Domains in SCOPe 2.08: d6lyhe_
  • Chain 'F':
    Compound: N-methyltransferase CkTcS
    Species: Camellia sinensis var. assamica [TaxId:261999]
    Database cross-references and differences (RAF-indexed):
    • PDB 6LYH
    Domains in SCOPe 2.08: d6lyhf_
  • Chain 'G':
    Compound: N-methyltransferase CkTcS
    Species: Camellia sinensis var. assamica [TaxId:261999]
    Database cross-references and differences (RAF-indexed):
    • PDB 6LYH
    Domains in SCOPe 2.08: d6lyhg_
  • Chain 'H':
    Compound: N-methyltransferase CkTcS
    Species: Camellia sinensis var. assamica [TaxId:261999]
    Database cross-references and differences (RAF-indexed):
    • PDB 6LYH
    Domains in SCOPe 2.08: d6lyhh_
  • Heterogens: SAH, EXU

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6lyhA (A:)
svkevlfmntgegessyvqnssftekvasmampalenavetlfskdfhlfqainaadlgc
atgpntfavistikrmmekkcrelncqtlelqvymndlfgndfntlfkglsskvignkce
evscyvmgvpgsfhgrlfprnslhlvhssysvhwltqapkgltsreglalnkgriyiskt
sppvvreaylsqfhedftmflnarsqevvpngcmvlilrgrqssdpsdmqscfiwellai
aiaelvsqglidedkldtfnipcyfpsleevkdiverdgsftidhmegfeldslqmqend
kwvrgekfakivraftepiisnqfgheimdklydkfthivvsdleaklpkttsiilvlsk
ivg

    Sequence, based on observed residues (ATOM records): (download) 
    >6lyhA (A:)
vkevlfmntgegessyvqnssftekvasmampalenavetlfskdfhlfqainaadlgca
tgpntfavistikrmmekkcrelncqtlelqvymndlfgndfntlfkglsskvinkceev
scyvmgvpgsfhgrlfprnslhlvhssysvhwltqapkgltsrealnkgriyisktsppv
vreaylsqfhedftmflnarsqevvpngcmvlilrgrqssdpsdmqscfiwellaiaiae
lvsqglidedkldtfnipcyfpsleevkdiverdgsftidhmegfeldslqmqendkwvr
gekfakivraftepiisnqfgheimdklydkfthivvsdleaklpkttsiilvlskiv

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6lyhB (B:)
svkevlfmntgegessyvqnssftekvasmampalenavetlfskdfhlfqainaadlgc
atgpntfavistikrmmekkcrelncqtlelqvymndlfgndfntlfkglsskvignkce
evscyvmgvpgsfhgrlfprnslhlvhssysvhwltqapkgltsreglalnkgriyiskt
sppvvreaylsqfhedftmflnarsqevvpngcmvlilrgrqssdpsdmqscfiwellai
aiaelvsqglidedkldtfnipcyfpsleevkdiverdgsftidhmegfeldslqmqend
kwvrgekfakivraftepiisnqfgheimdklydkfthivvsdleaklpkttsiilvlsk
ivg

    Sequence, based on observed residues (ATOM records): (download) 
    >6lyhB (B:)
vkevlfmntgegessyvqnssftekvasmampalenavetlfskdfhlfqainaadlgca
tgpntfavistikrmmekkcrelncqtlelqvymndlfgndfntlfkglsskvieevscy
vmgvpgsfhgrlfprnslhlvhssysvhwltqapklalnkgriyisktsppvvreaylsq
fhedftmflnarsqevvpngcmvlilrgrqssdpsdmqscfiwellaiaiaelvsqglid
edkldtfnipcyfpsleevkdiverdgsftidhmegfeldslqmqendkwvrgekfakiv
raftepiisnqfgheimdklydkfthivvsdleaklpkttsiilvlskiv

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >6lyhC (C:)
svkevlfmntgegessyvqnssftekvasmampalenavetlfskdfhlfqainaadlgc
atgpntfavistikrmmekkcrelncqtlelqvymndlfgndfntlfkglsskvignkce
evscyvmgvpgsfhgrlfprnslhlvhssysvhwltqapkgltsreglalnkgriyiskt
sppvvreaylsqfhedftmflnarsqevvpngcmvlilrgrqssdpsdmqscfiwellai
aiaelvsqglidedkldtfnipcyfpsleevkdiverdgsftidhmegfeldslqmqend
kwvrgekfakivraftepiisnqfgheimdklydkfthivvsdleaklpkttsiilvlsk
ivg

    Sequence, based on observed residues (ATOM records): (download) 
    >6lyhC (C:)
vkevlfmntgegessyvqnssftekvasmampalenavetlfskdfhlfqainaadlgca
tgpntfavistikrmmekkcrelntlelqvymndlfgndfntlfkglsscyvmgvpgsfh
grlfprnslhlvhssysvhwltqapkgltsrelalnkgriyisktsppvvreaylsqfhe
dftmflnarsqevvpngcmvlilrgrqssdpsdmqscfiwellaiaiaelvsqglidedk
ldtfnipcyfpsleevkdiverdgsftidhmegfeldslqmqendkwvrgekfakivraf
tepiisnqfgheimdklydkfthivvsdleaklpkttsiilvlskiv

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >6lyhD (D:)
svkevlfmntgegessyvqnssftekvasmampalenavetlfskdfhlfqainaadlgc
atgpntfavistikrmmekkcrelncqtlelqvymndlfgndfntlfkglsskvignkce
evscyvmgvpgsfhgrlfprnslhlvhssysvhwltqapkgltsreglalnkgriyiskt
sppvvreaylsqfhedftmflnarsqevvpngcmvlilrgrqssdpsdmqscfiwellai
aiaelvsqglidedkldtfnipcyfpsleevkdiverdgsftidhmegfeldslqmqend
kwvrgekfakivraftepiisnqfgheimdklydkfthivvsdleaklpkttsiilvlsk
ivg

    Sequence, based on observed residues (ATOM records): (download) 
    >6lyhD (D:)
vkevlfmntgegessyvqnssftekvasmampalenavetlfskdfhlfqainaadlgca
tgpntfavistikrmmekkcrelncqtlelqvymndlfgndfntlfkglsskvnkceevs
cyvmgvpgsfhgrlfprnslhlvhssysvhwltqapkgltsrelalnkgriyisktsppv
vreaylsqfhedftmflnarsqevvpngcmvlilrgrqssdpsdmqscfiwellaiaiae
lvsqglidedkldtfnipcyfpsleevkdiverdgsftidhmegfeldslqmqendkwvr
gekfakivraftepiisnqfgheimdklydkfthivvsdleaklpkttsiilvlskiv

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >6lyhE (E:)
svkevlfmntgegessyvqnssftekvasmampalenavetlfskdfhlfqainaadlgc
atgpntfavistikrmmekkcrelncqtlelqvymndlfgndfntlfkglsskvignkce
evscyvmgvpgsfhgrlfprnslhlvhssysvhwltqapkgltsreglalnkgriyiskt
sppvvreaylsqfhedftmflnarsqevvpngcmvlilrgrqssdpsdmqscfiwellai
aiaelvsqglidedkldtfnipcyfpsleevkdiverdgsftidhmegfeldslqmqend
kwvrgekfakivraftepiisnqfgheimdklydkfthivvsdleaklpkttsiilvlsk
ivg

    Sequence, based on observed residues (ATOM records): (download) 
    >6lyhE (E:)
vkevlfmntgegessyvqnssftekvasmampalenavetlfskdfhlfqainaadlgca
tgpntfavistikrmmekkcrelncqtlelqvymndlfgndfntlfkglsskvnkceevs
cyvmgvpgsfhgrlfprnslhlvhssysvhwltqapkgltsrelalnkgriyisktsppv
vreaylsqfhedftmflnarsqevvpngcmvlilrgrqssdpsdmqscfiwellaiaiae
lvsqglidedkldtfnipcyfpsleevkdiverdgsftidhmegfeldslqmqendkwvr
gekfakivraftepiisnqfgheimdklydkfthivvsdleaklpkttsiilvlskiv

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >6lyhF (F:)
svkevlfmntgegessyvqnssftekvasmampalenavetlfskdfhlfqainaadlgc
atgpntfavistikrmmekkcrelncqtlelqvymndlfgndfntlfkglsskvignkce
evscyvmgvpgsfhgrlfprnslhlvhssysvhwltqapkgltsreglalnkgriyiskt
sppvvreaylsqfhedftmflnarsqevvpngcmvlilrgrqssdpsdmqscfiwellai
aiaelvsqglidedkldtfnipcyfpsleevkdiverdgsftidhmegfeldslqmqend
kwvrgekfakivraftepiisnqfgheimdklydkfthivvsdleaklpkttsiilvlsk
ivg

    Sequence, based on observed residues (ATOM records): (download) 
    >6lyhF (F:)
vkevlfmntgegessyvqnssftekvasmampalenavetlfskdfhlfqainaadlgca
tgpntfavistikrmmekkcrelncqtlelqvymndlfgndfntlfkglsskvevscyvm
gvpgsfhgrlfprnslhlvhssysvhwltqapkgltsrelalnkgriyisktsppvreay
lsqfhedftmflnarsqevvpngcmvlilrgrqssdpsdmqscfiwellaiaiaelvsqg
lidedkldtfpcyfpsleevkdiverdgsftidhmegfeldslqmqendkwvrgekfaki
vraftepiisnqfgheimdklydkfthivvsdleaklpkttsiilvlskiv

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >6lyhG (G:)
svkevlfmntgegessyvqnssftekvasmampalenavetlfskdfhlfqainaadlgc
atgpntfavistikrmmekkcrelncqtlelqvymndlfgndfntlfkglsskvignkce
evscyvmgvpgsfhgrlfprnslhlvhssysvhwltqapkgltsreglalnkgriyiskt
sppvvreaylsqfhedftmflnarsqevvpngcmvlilrgrqssdpsdmqscfiwellai
aiaelvsqglidedkldtfnipcyfpsleevkdiverdgsftidhmegfeldslqmqend
kwvrgekfakivraftepiisnqfgheimdklydkfthivvsdleaklpkttsiilvlsk
ivg

    Sequence, based on observed residues (ATOM records): (download) 
    >6lyhG (G:)
vkevlfmntgegessyvqnssftekvasmampalenavetlfskdfhlfqainaadlgca
tgpntfavistikrmmekkcrelncqtlelqvymndlfgndfntlfkglsskvnkceevs
cyvmgvpgsfhgrlfprnslhlvhssysvhwltqapkgltsrealnkgriyisktsppvv
reaylsqfhedftmflnarsqevvpngcmvlilrgrqssdpsdmqscfiwellaiaiael
vsqglidedkldtfnipcyfpsleevkdiverdgsftidhmegfeldslqmqendkwvrg
ekfakivraftepiisnqfgheimdklydkfthivvsdleaklpkttsiilvlskiv

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >6lyhH (H:)
svkevlfmntgegessyvqnssftekvasmampalenavetlfskdfhlfqainaadlgc
atgpntfavistikrmmekkcrelncqtlelqvymndlfgndfntlfkglsskvignkce
evscyvmgvpgsfhgrlfprnslhlvhssysvhwltqapkgltsreglalnkgriyiskt
sppvvreaylsqfhedftmflnarsqevvpngcmvlilrgrqssdpsdmqscfiwellai
aiaelvsqglidedkldtfnipcyfpsleevkdiverdgsftidhmegfeldslqmqend
kwvrgekfakivraftepiisnqfgheimdklydkfthivvsdleaklpkttsiilvlsk
ivg

    Sequence, based on observed residues (ATOM records): (download) 
    >6lyhH (H:)
vkevlfmntgegessyvqnssftekvasmampalenavetlfskdfhlfqainaadlgca
tgpntfavistikrmmekkcrelncqtlelqvymndlfgndfntlfkglsskvkceevsc
yvmgvpgsfhgrlfprnslhlvhssysvhwltqapkgltsrelnkgriyisktsppvvre
aylsqfhedftmflnarsqevvpngcmvlilrgrqssdpsdmqscfiwellaiaiaelvs
qglidedkldtfnipcyfpsleevkdiverdgsftidhmegfeldslqmqendkwvrgek
fakivraftepiisnqfgheimdklydkfthivvsdleaklpkttsiilvlskiv