PDB entry 6lyg

View 6lyg on RCSB PDB site
Description: cryo-em structure of the calcium homeostasis modulator 1 channel
Deposited on 2020-02-14, released 2020-10-07
The last revision was dated 2020-10-07, with a file datestamp of 2020-10-02.
Experiment type: EM
Resolution: 3.1 Å
R-factor: N/A
AEROSPACI score: 0.19 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Calcium homeostasis modulator 1
    Species: Danio rerio [TaxId:7955]
    Gene: CALHM1
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Calcium homeostasis modulator 1
    Species: Danio rerio [TaxId:7955]
    Gene: CALHM1
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Calcium homeostasis modulator 1
    Species: Danio rerio [TaxId:7955]
    Gene: CALHM1
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Calcium homeostasis modulator 1
    Species: Danio rerio [TaxId:7955]
    Gene: CALHM1
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Calcium homeostasis modulator 1
    Species: Danio rerio [TaxId:7955]
    Gene: CALHM1
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Calcium homeostasis modulator 1
    Species: Danio rerio [TaxId:7955]
    Gene: CALHM1
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: Calcium homeostasis modulator 1
    Species: Danio rerio [TaxId:7955]
    Gene: CALHM1
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: Calcium homeostasis modulator 1
    Species: Danio rerio [TaxId:7955]
    Gene: CALHM1
    Database cross-references and differences (RAF-indexed):
  • Heterogens: NAG

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6lygA (A:)
leqkliseedlrsdkfrimvqflqanqesfmngicgimalasaqmyssfeftcpclpdyn
yaygigilivppiwffllgyvmnnnisvlteewkrpvgkrskdpavlrymfssmtqrali
apavwiavtlmdgksflcafsptadlsefvnesyqslsqkellkiqakipckdifeehei
isreaatryirclsqacgwtflmvitlvaflvrairpcftqaaflktkywshyidterkl
fdetckehaksfakvciqqyfesisgeivsqlpqspakkgkgnkdedgekqksdeerllg
irkegdmnkvlwnwhtckpplllskrteemnghahldthsltderhtkkkavvyyskv

    Sequence, based on observed residues (ATOM records):
    >6lygA (A:)
rimvqflqanqesfgimalasaqmyssfeftcpclpdynyaygigilivppiwffllgyv
mnnnisvlteewkrpvgkdpavlrymfssmtqraliapavwiavtlmdgksflcafspta
dlsefvnesyqslsqkellkiqakipckdifeeheiisreaatryirclsqacgwtflmv
itlvaflvrairtqaaflktkywshyidterklfdetckehaksfakvciqq

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6lygB (B:)
leqkliseedlrsdkfrimvqflqanqesfmngicgimalasaqmyssfeftcpclpdyn
yaygigilivppiwffllgyvmnnnisvlteewkrpvgkrskdpavlrymfssmtqrali
apavwiavtlmdgksflcafsptadlsefvnesyqslsqkellkiqakipckdifeehei
isreaatryirclsqacgwtflmvitlvaflvrairpcftqaaflktkywshyidterkl
fdetckehaksfakvciqqyfesisgeivsqlpqspakkgkgnkdedgekqksdeerllg
irkegdmnkvlwnwhtckpplllskrteemnghahldthsltderhtkkkavvyyskv

    Sequence, based on observed residues (ATOM records):
    >6lygB (B:)
rimvqflqanqesfgimalasaqmyssfeftcpclpdynyaygigilivppiwffllgyv
mnnnisvlteewkrpvgkdpavlrymfssmtqraliapavwiavtlmdgksflcafspta
dlsefvnesyqslsqkellkiqakipckdifeeheiisreaatryirclsqacgwtflmv
itlvaflvrairtqaaflktkywshyidterklfdetckehaksfakvciqq

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6lygC (C:)
leqkliseedlrsdkfrimvqflqanqesfmngicgimalasaqmyssfeftcpclpdyn
yaygigilivppiwffllgyvmnnnisvlteewkrpvgkrskdpavlrymfssmtqrali
apavwiavtlmdgksflcafsptadlsefvnesyqslsqkellkiqakipckdifeehei
isreaatryirclsqacgwtflmvitlvaflvrairpcftqaaflktkywshyidterkl
fdetckehaksfakvciqqyfesisgeivsqlpqspakkgkgnkdedgekqksdeerllg
irkegdmnkvlwnwhtckpplllskrteemnghahldthsltderhtkkkavvyyskv

    Sequence, based on observed residues (ATOM records):
    >6lygC (C:)
rimvqflqanqesfgimalasaqmyssfeftcpclpdynyaygigilivppiwffllgyv
mnnnisvlteewkrpvgkdpavlrymfssmtqraliapavwiavtlmdgksflcafspta
dlsefvnesyqslsqkellkiqakipckdifeeheiisreaatryirclsqacgwtflmv
itlvaflvrairtqaaflktkywshyidterklfdetckehaksfakvciqq

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6lygD (D:)
leqkliseedlrsdkfrimvqflqanqesfmngicgimalasaqmyssfeftcpclpdyn
yaygigilivppiwffllgyvmnnnisvlteewkrpvgkrskdpavlrymfssmtqrali
apavwiavtlmdgksflcafsptadlsefvnesyqslsqkellkiqakipckdifeehei
isreaatryirclsqacgwtflmvitlvaflvrairpcftqaaflktkywshyidterkl
fdetckehaksfakvciqqyfesisgeivsqlpqspakkgkgnkdedgekqksdeerllg
irkegdmnkvlwnwhtckpplllskrteemnghahldthsltderhtkkkavvyyskv

    Sequence, based on observed residues (ATOM records):
    >6lygD (D:)
rimvqflqanqesfgimalasaqmyssfeftcpclpdynyaygigilivppiwffllgyv
mnnnisvlteewkrpvgkdpavlrymfssmtqraliapavwiavtlmdgksflcafspta
dlsefvnesyqslsqkellkiqakipckdifeeheiisreaatryirclsqacgwtflmv
itlvaflvrairtqaaflktkywshyidterklfdetckehaksfakvciqq

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6lygE (E:)
leqkliseedlrsdkfrimvqflqanqesfmngicgimalasaqmyssfeftcpclpdyn
yaygigilivppiwffllgyvmnnnisvlteewkrpvgkrskdpavlrymfssmtqrali
apavwiavtlmdgksflcafsptadlsefvnesyqslsqkellkiqakipckdifeehei
isreaatryirclsqacgwtflmvitlvaflvrairpcftqaaflktkywshyidterkl
fdetckehaksfakvciqqyfesisgeivsqlpqspakkgkgnkdedgekqksdeerllg
irkegdmnkvlwnwhtckpplllskrteemnghahldthsltderhtkkkavvyyskv

    Sequence, based on observed residues (ATOM records):
    >6lygE (E:)
rimvqflqanqesfgimalasaqmyssfeftcpclpdynyaygigilivppiwffllgyv
mnnnisvlteewkrpvgkdpavlrymfssmtqraliapavwiavtlmdgksflcafspta
dlsefvnesyqslsqkellkiqakipckdifeeheiisreaatryirclsqacgwtflmv
itlvaflvrairtqaaflktkywshyidterklfdetckehaksfakvciqq

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6lygF (F:)
leqkliseedlrsdkfrimvqflqanqesfmngicgimalasaqmyssfeftcpclpdyn
yaygigilivppiwffllgyvmnnnisvlteewkrpvgkrskdpavlrymfssmtqrali
apavwiavtlmdgksflcafsptadlsefvnesyqslsqkellkiqakipckdifeehei
isreaatryirclsqacgwtflmvitlvaflvrairpcftqaaflktkywshyidterkl
fdetckehaksfakvciqqyfesisgeivsqlpqspakkgkgnkdedgekqksdeerllg
irkegdmnkvlwnwhtckpplllskrteemnghahldthsltderhtkkkavvyyskv

    Sequence, based on observed residues (ATOM records):
    >6lygF (F:)
rimvqflqanqesfgimalasaqmyssfeftcpclpdynyaygigilivppiwffllgyv
mnnnisvlteewkrpvgkdpavlrymfssmtqraliapavwiavtlmdgksflcafspta
dlsefvnesyqslsqkellkiqakipckdifeeheiisreaatryirclsqacgwtflmv
itlvaflvrairtqaaflktkywshyidterklfdetckehaksfakvciqq

  • Chain 'G':
    Sequence, based on SEQRES records:
    >6lygG (G:)
leqkliseedlrsdkfrimvqflqanqesfmngicgimalasaqmyssfeftcpclpdyn
yaygigilivppiwffllgyvmnnnisvlteewkrpvgkrskdpavlrymfssmtqrali
apavwiavtlmdgksflcafsptadlsefvnesyqslsqkellkiqakipckdifeehei
isreaatryirclsqacgwtflmvitlvaflvrairpcftqaaflktkywshyidterkl
fdetckehaksfakvciqqyfesisgeivsqlpqspakkgkgnkdedgekqksdeerllg
irkegdmnkvlwnwhtckpplllskrteemnghahldthsltderhtkkkavvyyskv

    Sequence, based on observed residues (ATOM records):
    >6lygG (G:)
rimvqflqanqesfgimalasaqmyssfeftcpclpdynyaygigilivppiwffllgyv
mnnnisvlteewkrpvgkdpavlrymfssmtqraliapavwiavtlmdgksflcafspta
dlsefvnesyqslsqkellkiqakipckdifeeheiisreaatryirclsqacgwtflmv
itlvaflvrairtqaaflktkywshyidterklfdetckehaksfakvciqq

  • Chain 'H':
    Sequence, based on SEQRES records:
    >6lygH (H:)
leqkliseedlrsdkfrimvqflqanqesfmngicgimalasaqmyssfeftcpclpdyn
yaygigilivppiwffllgyvmnnnisvlteewkrpvgkrskdpavlrymfssmtqrali
apavwiavtlmdgksflcafsptadlsefvnesyqslsqkellkiqakipckdifeehei
isreaatryirclsqacgwtflmvitlvaflvrairpcftqaaflktkywshyidterkl
fdetckehaksfakvciqqyfesisgeivsqlpqspakkgkgnkdedgekqksdeerllg
irkegdmnkvlwnwhtckpplllskrteemnghahldthsltderhtkkkavvyyskv

    Sequence, based on observed residues (ATOM records):
    >6lygH (H:)
rimvqflqanqesfgimalasaqmyssfeftcpclpdynyaygigilivppiwffllgyv
mnnnisvlteewkrpvgkdpavlrymfssmtqraliapavwiavtlmdgksflcafspta
dlsefvnesyqslsqkellkiqakipckdifeeheiisreaatryirclsqacgwtflmv
itlvaflvrairtqaaflktkywshyidterklfdetckehaksfakvciqq