PDB entry 6ly9

View 6ly9 on RCSB PDB site
Description: the membrane-embedded vo domain of v/a-atpase from thermus thermophilus
Deposited on 2020-02-13, released 2020-09-09
The last revision was dated 2020-09-30, with a file datestamp of 2020-09-25.
Experiment type: EM
Resolution: 3.93 Å
R-factor: N/A
AEROSPACI score: 0.11 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'K':
    Compound: V-type ATP synthase, subunit (VAPC-THERM)
    Species: Thermus thermophilus HB8 [TaxId:300852]
    Database cross-references and differences (RAF-indexed):
  • Chain 'L':
    Compound: V-type ATP synthase subunit E
    Species: Thermus thermophilus HB8 [TaxId:300852]
    Database cross-references and differences (RAF-indexed):
  • Chain 'M':
    Compound: V-type ATP synthase subunit C
    Species: Thermus thermophilus HB8 [TaxId:300852]
    Database cross-references and differences (RAF-indexed):
  • Chain 'N':
    Compound: V-type ATP synthase subunit I
    Species: Thermus thermophilus HB8 [TaxId:300852]
    Database cross-references and differences (RAF-indexed):
  • Chain 'O':
    Compound: V-type ATP synthase, subunit K
    Species: Thermus thermophilus HB8 [TaxId:300852]
    Database cross-references and differences (RAF-indexed):
  • Chain 'P':
    Compound: V-type ATP synthase, subunit K
    Species: Thermus thermophilus HB8 [TaxId:300852]
    Database cross-references and differences (RAF-indexed):
  • Chain 'Q':
    Compound: V-type ATP synthase, subunit K
    Species: Thermus thermophilus HB8 [TaxId:300852]
    Database cross-references and differences (RAF-indexed):
  • Chain 'R':
    Compound: V-type ATP synthase, subunit K
    Species: Thermus thermophilus HB8 [TaxId:300852]
    Database cross-references and differences (RAF-indexed):
  • Chain 'S':
    Compound: V-type ATP synthase, subunit K
    Species: Thermus thermophilus HB8 [TaxId:300852]
    Database cross-references and differences (RAF-indexed):
  • Chain 'T':
    Compound: V-type ATP synthase, subunit K
    Species: Thermus thermophilus HB8 [TaxId:300852]
    Database cross-references and differences (RAF-indexed):
  • Chain 'U':
    Compound: V-type ATP synthase, subunit K
    Species: Thermus thermophilus HB8 [TaxId:300852]
    Database cross-references and differences (RAF-indexed):
  • Chain 'V':
    Compound: V-type ATP synthase, subunit K
    Species: Thermus thermophilus HB8 [TaxId:300852]
    Database cross-references and differences (RAF-indexed):
  • Chain 'W':
    Compound: V-type ATP synthase, subunit K
    Species: Thermus thermophilus HB8 [TaxId:300852]
    Database cross-references and differences (RAF-indexed):
  • Chain 'X':
    Compound: V-type ATP synthase, subunit K
    Species: Thermus thermophilus HB8 [TaxId:300852]
    Database cross-references and differences (RAF-indexed):
  • Chain 'Y':
    Compound: V-type ATP synthase, subunit K
    Species: Thermus thermophilus HB8 [TaxId:300852]
    Database cross-references and differences (RAF-indexed):
  • Chain 'Z':
    Compound: V-type ATP synthase, subunit K
    Species: Thermus thermophilus HB8 [TaxId:300852]
    Database cross-references and differences (RAF-indexed):

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'K':
    Sequence, based on SEQRES records:
    >6ly9K (K:)
mtgglvlnaisraggamgglglikslaekekqllerleaakkeaeervkraeaeakalle
eaeakakaleaqyrereraeteallaryreraeaeakavrekamarldeavalvlkevlp

    Sequence, based on observed residues (ATOM records):
    >6ly9K (K:)
glikslaekekqllerleaakk

  • Chain 'L':
    Sequence, based on SEQRES records:
    >6ly9L (L:)
mskleailsqeveaeiqallqeaeakaeavkreaeekakallqareraleaqyraalrra
esagellvatartqargevleevrrrvrealealpqkpewpevvrklalealealpgaka
lvanpedlphlealarergvelqaepalrlgvravgaegktqvensllarldrawdalss
kvaqalwg

    Sequence, based on observed residues (ATOM records):
    >6ly9L (L:)
skleailsqeveaeiqallq

  • Chain 'M':
    Sequence, based on SEQRES records:
    >6ly9M (M:)
maddfaylnarvrvrrgtllkesffqealdlsfadflrllsetvyggelagqglpdvdra
vlrtqaklvgdlprlvtgeareavrllllrndlhnlqallrakatgrpfeevlllpgtlr
eevwrqayeaqdpagmaqvlavpghplaralravlretqdlarveallakrffedvakaa
kgldqpalrdylalevdaenlrtafklqgsglapdafflkggrfvdrvrfarlmegdyav
ldelsgtpfsglsgvrdlkalerglrcvllkeakkgvqdplgvglvlayvkereweavrl
rllarrayfglpraqveeevvcp

    Sequence, based on observed residues (ATOM records):
    >6ly9M (M:)
ddfaylnarvrvrrgtllkesffqealdlsfadflrllsetvyggelagqglpdvdravl
rtqaklvgdlprlvtgeareavrllllrndlhnlqallrakatgrpfeevlllpgtlree
vwrqayeaqdpagmaqvlavpghplaralravlretqdlarveallakrffedvakaakg
ldqpalrdylalevdaenlrtafklqgsglapdafflkggrfvdrvrfarlmegdyavld
elsgtpfsglsgvrdlkalerglrcvllkeakkgvqdplgvglvlayvkereweavrlrl
larrayfglpraqveeevvcp

  • Chain 'N':
    Sequence, based on SEQRES records:
    >6ly9N (N:)
miapmeklvlagpkgrakellqslqqagvvhletlrpealsayqlspeeraelrrweavs
agaehtlsllgleaeparpfpegleaaekalspiqahaegltrqkqeleeelalaqayle
plerlaalahgldkspflrvipflltekelplveealrkaledryllaheayaggvaalv
vvhrkevdqakaalsragvaelrlpgalgelplseaarrlkeraeaaprelsevrqhlak
laresastlqslwtraqdevarlkaleelasgrfgfallgyvpvkakpkveealarhkes
vvyafepvdehheadripvvldnppwakpfellvsflntpkygtfdptpvvpvffpfwfg
mivgdigyallfylvgrwlsgyvkrneplvidlfalklkpqvigklvhilnwmvfwtvvw
gviygeffgtflehlgvfgtpehpglipilihridtaktanllillsvafgvvlvffgla
lraylglkhrhmahfwegvgylgglvgvlalaasylgnlqagwlqglmylgfgvfllavl
msriwlmipeiftqaghilshiriyavgaaggilaglltdvgfalaerlgllgvllgllv
agvlhllilllttlghmlqpirllwvefftkfgfyeengrpyrpfksvreaq

    Sequence, based on observed residues (ATOM records):
    >6ly9N (N:)
pmeklvlagpkgrakellqslqqagvvhletlrpealsayqlspeeraelrrweavsaga
ehtlsllgleaeparpfpegleaaekalspiqahaegltrqkqeleeelalaqayleple
rlaalahgldkspflrvipflltekelplveealrkaledryllaheayaggvaalvvvh
rkevdqakaalsragvaelrlpgalgelplseaarrlkeraeaaprelsevrqhlaklar
esastlqslwtraqdevarlkaleelasgrfgfallgyvpvkakpkveealarhkesvvy
afepvdehheadripvvldnppwakpfellvsflntpkygtfdptpvvpvffpfwfgmiv
gdigyallfylvgrwlsgyvkrneplvidlfalklkpqvigklvhilnwmvfwtvvwgvi
ygeffgtflehlgvfgtpehpglipilihridtaktanllillsvafgvvlvffglalra
ylglkhrhmahfwegvgylgglvgvlalaasylgnlqagwlqglmylgfgvfllavlmsr
iwlmipeiftqaghilshiriyavgaaggilaglltdvgfalaerlgllgvllgllvagv
lhllilllttlghmlqpirllwvefftkfgfyeengrpyrpfksvreaq

  • Chain 'O':
    Sequence, based on SEQRES records:
    >6ly9O (O:)
mkkllvtvllavfgalafaaeeaaasggldrgliavgmglavglaalgtgvaqarigaag
vgaiaedrsnfgtaliflllpetlvifglliafilngrl

    Sequence, based on observed residues (ATOM records):
    >6ly9O (O:)
ggldrgliavgmglavglaalgtgvaqarigaagvgaiaedrsnfgtaliflllpetlvi
fglliafilngrl

  • Chain 'P':
    Sequence, based on SEQRES records:
    >6ly9P (P:)
mkkllvtvllavfgalafaaeeaaasggldrgliavgmglavglaalgtgvaqarigaag
vgaiaedrsnfgtaliflllpetlvifglliafilngrl

    Sequence, based on observed residues (ATOM records):
    >6ly9P (P:)
aasggldrgliavgmglavglaalgtgvaqarigaagvgaiaedrsnfgtaliflllpet
lvifglliafilngrl

  • Chain 'Q':
    Sequence, based on SEQRES records:
    >6ly9Q (Q:)
mkkllvtvllavfgalafaaeeaaasggldrgliavgmglavglaalgtgvaqarigaag
vgaiaedrsnfgtaliflllpetlvifglliafilngrl

    Sequence, based on observed residues (ATOM records):
    >6ly9Q (Q:)
sggldrgliavgmglavglaalgtgvaqarigaagvgaiaedrsnfgtaliflllpetlv
ifglliafilngrl

  • Chain 'R':
    Sequence, based on SEQRES records:
    >6ly9R (R:)
mkkllvtvllavfgalafaaeeaaasggldrgliavgmglavglaalgtgvaqarigaag
vgaiaedrsnfgtaliflllpetlvifglliafilngrl

    Sequence, based on observed residues (ATOM records):
    >6ly9R (R:)
sggldrgliavgmglavglaalgtgvaqarigaagvgaiaedrsnfgtaliflllpetlv
ifglliafilngrl

  • Chain 'S':
    Sequence, based on SEQRES records:
    >6ly9S (S:)
mkkllvtvllavfgalafaaeeaaasggldrgliavgmglavglaalgtgvaqarigaag
vgaiaedrsnfgtaliflllpetlvifglliafilngrl

    Sequence, based on observed residues (ATOM records):
    >6ly9S (S:)
sggldrgliavgmglavglaalgtgvaqarigaagvgaiaedrsnfgtaliflllpetlv
ifglliafilngrl

  • Chain 'T':
    Sequence, based on SEQRES records:
    >6ly9T (T:)
mkkllvtvllavfgalafaaeeaaasggldrgliavgmglavglaalgtgvaqarigaag
vgaiaedrsnfgtaliflllpetlvifglliafilngrl

    Sequence, based on observed residues (ATOM records):
    >6ly9T (T:)
ggldrgliavgmglavglaalgtgvaqarigaagvgaiaedrsnfgtaliflllpetlvi
fglliafilngrl

  • Chain 'U':
    Sequence, based on SEQRES records:
    >6ly9U (U:)
mkkllvtvllavfgalafaaeeaaasggldrgliavgmglavglaalgtgvaqarigaag
vgaiaedrsnfgtaliflllpetlvifglliafilngrl

    Sequence, based on observed residues (ATOM records):
    >6ly9U (U:)
ggldrgliavgmglavglaalgtgvaqarigaagvgaiaedrsnfgtaliflllpetlvi
fglliafilngrl

  • Chain 'V':
    Sequence, based on SEQRES records:
    >6ly9V (V:)
mkkllvtvllavfgalafaaeeaaasggldrgliavgmglavglaalgtgvaqarigaag
vgaiaedrsnfgtaliflllpetlvifglliafilngrl

    Sequence, based on observed residues (ATOM records):
    >6ly9V (V:)
gldrgliavgmglavglaalgtgvaqarigaagvgaiaedrsnfgtaliflllpetlvif
glliafilngrl

  • Chain 'W':
    Sequence, based on SEQRES records:
    >6ly9W (W:)
mkkllvtvllavfgalafaaeeaaasggldrgliavgmglavglaalgtgvaqarigaag
vgaiaedrsnfgtaliflllpetlvifglliafilngrl

    Sequence, based on observed residues (ATOM records):
    >6ly9W (W:)
sggldrgliavgmglavglaalgtgvaqarigaagvgaiaedrsnfgtaliflllpetlv
ifglliafilngrl

  • Chain 'X':
    Sequence, based on SEQRES records:
    >6ly9X (X:)
mkkllvtvllavfgalafaaeeaaasggldrgliavgmglavglaalgtgvaqarigaag
vgaiaedrsnfgtaliflllpetlvifglliafilngrl

    Sequence, based on observed residues (ATOM records):
    >6ly9X (X:)
ggldrgliavgmglavglaalgtgvaqarigaagvgaiaedrsnfgtaliflllpetlvi
fglliafilngrl

  • Chain 'Y':
    Sequence, based on SEQRES records:
    >6ly9Y (Y:)
mkkllvtvllavfgalafaaeeaaasggldrgliavgmglavglaalgtgvaqarigaag
vgaiaedrsnfgtaliflllpetlvifglliafilngrl

    Sequence, based on observed residues (ATOM records):
    >6ly9Y (Y:)
ggldrgliavgmglavglaalgtgvaqarigaagvgaiaedrsnfgtaliflllpetlvi
fglliafilngrl

  • Chain 'Z':
    Sequence, based on SEQRES records:
    >6ly9Z (Z:)
mkkllvtvllavfgalafaaeeaaasggldrgliavgmglavglaalgtgvaqarigaag
vgaiaedrsnfgtaliflllpetlvifglliafilngrl

    Sequence, based on observed residues (ATOM records):
    >6ly9Z (Z:)
ggldrgliavgmglavglaalgtgvaqarigaagvgaiaedrsnfgtaliflllpetlvi
fglliafilngrl