PDB entry 6luk

View 6luk on RCSB PDB site
Description: Crystal structure of the SAMD1 SAM domain in another crystal form
Class: DNA binding protein
Keywords: CpG-islands, transcription, decamer, DNA BINDING PROTEIN
Deposited on 2020-01-29, released 2021-02-03
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-07-07, with a file datestamp of 2021-07-02.
Experiment type: XRAY
Resolution: 2.05 Å
R-factor: N/A
AEROSPACI score: 0.39 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Atherin
    Species: Homo sapiens [TaxId:9606]
    Gene: SAMD1
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q6SPF0 (1-68)
      • expression tag (0)
    Domains in SCOPe 2.08: d6luka1, d6luka2
  • Chain 'B':
    Compound: Atherin
    Species: Homo sapiens [TaxId:9606]
    Gene: SAMD1
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q6SPF0 (1-68)
      • expression tag (0)
    Domains in SCOPe 2.08: d6lukb1, d6lukb2
  • Chain 'C':
    Compound: Atherin
    Species: Homo sapiens [TaxId:9606]
    Gene: SAMD1
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q6SPF0 (1-68)
      • expression tag (0)
    Domains in SCOPe 2.08: d6lukc1, d6lukc2
  • Chain 'D':
    Compound: Atherin
    Species: Homo sapiens [TaxId:9606]
    Gene: SAMD1
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q6SPF0 (1-68)
      • expression tag (0)
    Domains in SCOPe 2.08: d6lukd1, d6lukd2
  • Chain 'E':
    Compound: Atherin
    Species: Homo sapiens [TaxId:9606]
    Gene: SAMD1
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q6SPF0 (1-68)
      • expression tag (0)
    Domains in SCOPe 2.08: d6luke1, d6luke2
  • Chain 'F':
    Compound: Atherin
    Species: Homo sapiens [TaxId:9606]
    Gene: SAMD1
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q6SPF0 (1-68)
      • expression tag (0)
    Domains in SCOPe 2.08: d6lukf1, d6lukf2
  • Chain 'G':
    Compound: Atherin
    Species: Homo sapiens [TaxId:9606]
    Gene: SAMD1
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q6SPF0 (1-68)
      • expression tag (0)
    Domains in SCOPe 2.08: d6lukg1, d6lukg2
  • Chain 'H':
    Compound: Atherin
    Species: Homo sapiens [TaxId:9606]
    Gene: SAMD1
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q6SPF0 (1-68)
      • expression tag (0)
    Domains in SCOPe 2.08: d6lukh1, d6lukh2
  • Chain 'I':
    Compound: Atherin
    Species: Homo sapiens [TaxId:9606]
    Gene: SAMD1
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q6SPF0 (1-68)
      • expression tag (0)
    Domains in SCOPe 2.08: d6luki1, d6luki2
  • Chain 'J':
    Compound: Atherin
    Species: Homo sapiens [TaxId:9606]
    Gene: SAMD1
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q6SPF0 (1-68)
      • expression tag (0)
    Domains in SCOPe 2.08: d6lukj1, d6lukj2
  • Chain 'K':
    Compound: Atherin
    Species: Homo sapiens [TaxId:9606]
    Gene: SAMD1
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q6SPF0 (1-68)
      • expression tag (0)
    Domains in SCOPe 2.08: d6lukk1, d6lukk2
  • Chain 'L':
    Compound: Atherin
    Species: Homo sapiens [TaxId:9606]
    Gene: SAMD1
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q6SPF0 (1-68)
      • expression tag (0)
    Domains in SCOPe 2.08: d6lukl1, d6lukl2
  • Chain 'M':
    Compound: Atherin
    Species: Homo sapiens [TaxId:9606]
    Gene: SAMD1
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q6SPF0 (1-68)
      • expression tag (0)
    Domains in SCOPe 2.08: d6lukm1, d6lukm2
  • Chain 'N':
    Compound: Atherin
    Species: Homo sapiens [TaxId:9606]
    Gene: SAMD1
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q6SPF0 (1-68)
      • expression tag (0)
    Domains in SCOPe 2.08: d6lukn1, d6lukn2
  • Chain 'O':
    Compound: Atherin
    Species: Homo sapiens [TaxId:9606]
    Gene: SAMD1
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q6SPF0 (1-68)
      • expression tag (0)
    Domains in SCOPe 2.08: d6luko1, d6luko2
  • Chain 'P':
    Compound: Atherin
    Species: Homo sapiens [TaxId:9606]
    Gene: SAMD1
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q6SPF0 (1-68)
      • expression tag (0)
    Domains in SCOPe 2.08: d6lukp1, d6lukp2
  • Chain 'Q':
    Compound: Atherin
    Species: Homo sapiens [TaxId:9606]
    Gene: SAMD1
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q6SPF0 (1-68)
      • expression tag (0)
    Domains in SCOPe 2.08: d6lukq1, d6lukq2
  • Chain 'R':
    Compound: Atherin
    Species: Homo sapiens [TaxId:9606]
    Gene: SAMD1
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q6SPF0 (1-68)
      • expression tag (0)
    Domains in SCOPe 2.08: d6lukr1, d6lukr2
  • Chain 'S':
    Compound: Atherin
    Species: Homo sapiens [TaxId:9606]
    Gene: SAMD1
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q6SPF0 (1-68)
      • expression tag (0)
    Domains in SCOPe 2.08: d6luks1, d6luks2
  • Chain 'T':
    Compound: Atherin
    Species: Homo sapiens [TaxId:9606]
    Gene: SAMD1
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q6SPF0 (1-68)
      • expression tag (0)
    Domains in SCOPe 2.08: d6lukt1, d6lukt2
  • Heterogens: SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6lukA (A:)
spvewtvmdvveyfteagfpeqatafqeqeidgkslllmqrtdvltglsirlgpalkiye
hhikvlqqg

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6lukB (B:)
spvewtvmdvveyfteagfpeqatafqeqeidgkslllmqrtdvltglsirlgpalkiye
hhikvlqqg

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6lukC (C:)
spvewtvmdvveyfteagfpeqatafqeqeidgkslllmqrtdvltglsirlgpalkiye
hhikvlqqg

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6lukD (D:)
spvewtvmdvveyfteagfpeqatafqeqeidgkslllmqrtdvltglsirlgpalkiye
hhikvlqqg

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6lukE (E:)
spvewtvmdvveyfteagfpeqatafqeqeidgkslllmqrtdvltglsirlgpalkiye
hhikvlqqg

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6lukF (F:)
spvewtvmdvveyfteagfpeqatafqeqeidgkslllmqrtdvltglsirlgpalkiye
hhikvlqqg

  • Chain 'G':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6lukG (G:)
spvewtvmdvveyfteagfpeqatafqeqeidgkslllmqrtdvltglsirlgpalkiye
hhikvlqqg

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6lukH (H:)
spvewtvmdvveyfteagfpeqatafqeqeidgkslllmqrtdvltglsirlgpalkiye
hhikvlqqg

  • Chain 'I':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6lukI (I:)
spvewtvmdvveyfteagfpeqatafqeqeidgkslllmqrtdvltglsirlgpalkiye
hhikvlqqg

  • Chain 'J':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6lukJ (J:)
spvewtvmdvveyfteagfpeqatafqeqeidgkslllmqrtdvltglsirlgpalkiye
hhikvlqqg

  • Chain 'K':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6lukK (K:)
spvewtvmdvveyfteagfpeqatafqeqeidgkslllmqrtdvltglsirlgpalkiye
hhikvlqqg

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6lukL (L:)
spvewtvmdvveyfteagfpeqatafqeqeidgkslllmqrtdvltglsirlgpalkiye
hhikvlqqg

  • Chain 'M':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6lukM (M:)
spvewtvmdvveyfteagfpeqatafqeqeidgkslllmqrtdvltglsirlgpalkiye
hhikvlqqg

  • Chain 'N':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6lukN (N:)
spvewtvmdvveyfteagfpeqatafqeqeidgkslllmqrtdvltglsirlgpalkiye
hhikvlqqg

  • Chain 'O':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6lukO (O:)
spvewtvmdvveyfteagfpeqatafqeqeidgkslllmqrtdvltglsirlgpalkiye
hhikvlqqg

  • Chain 'P':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6lukP (P:)
spvewtvmdvveyfteagfpeqatafqeqeidgkslllmqrtdvltglsirlgpalkiye
hhikvlqqg

  • Chain 'Q':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6lukQ (Q:)
spvewtvmdvveyfteagfpeqatafqeqeidgkslllmqrtdvltglsirlgpalkiye
hhikvlqqg

  • Chain 'R':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6lukR (R:)
spvewtvmdvveyfteagfpeqatafqeqeidgkslllmqrtdvltglsirlgpalkiye
hhikvlqqg

  • Chain 'S':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6lukS (S:)
spvewtvmdvveyfteagfpeqatafqeqeidgkslllmqrtdvltglsirlgpalkiye
hhikvlqqg

  • Chain 'T':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6lukT (T:)
spvewtvmdvveyfteagfpeqatafqeqeidgkslllmqrtdvltglsirlgpalkiye
hhikvlqqg