PDB entry 6lsd

View 6lsd on RCSB PDB site
Description: crystal structure of yeats domain of human yeats2 in complex with h3k27bz peptide
Deposited on 2020-01-17, released 2020-11-18
The last revision was dated 2021-01-27, with a file datestamp of 2021-01-22.
Experiment type: XRAY
Resolution: 2.05 Å
R-factor: N/A
AEROSPACI score: 0.38 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: YEATS domain-containing protein 2
    Species: Homo sapiens [TaxId:9606]
    Gene: YEATS2, KIAA1197
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: YEATS domain-containing protein 2
    Species: Homo sapiens [TaxId:9606]
    Gene: YEATS2, KIAA1197
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9ULM3 (3-134)
      • expression tag (0-2)
  • Chain 'C':
    Compound: 2
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6LSD (Start-7)
  • Chain 'D':
    Compound: 2
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6LSD (Start-7)
  • Heterogens: ACE, LBZ, SO4, GOL, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6lsdA (A:)
shmtsrlfvkktivvgnvskyippdkreendqsthkwmvyvrgsrrepsinhfvkkvwff
lhpsykpndlvevreppfhltrrgwgefpvrvqvhfkdsqnkridiihnlkldrtytglq
tlgaetvvdvelhrh

    Sequence, based on observed residues (ATOM records):
    >6lsdA (A:)
srlfvkktivvgnvskyippdkreendqsthkwmvyvrgsrrepsinhfvkkvwfflhps
ykpndlvevreppfhltrrgwgefpvrvqvhfkdsqnkridiihnlkldrtytglqtlga
etvvdvelhr

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records:
    >6lsdB (B:)
shmtsrlfvkktivvgnvskyippdkreendqsthkwmvyvrgsrrepsinhfvkkvwff
lhpsykpndlvevreppfhltrrgwgefpvrvqvhfkdsqnkridiihnlkldrtytglq
tlgaetvvdvelhrh

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records:
    >6lsdC (C:)
aarxsapa

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records:
    >6lsdD (D:)
aarxsapa