PDB entry 6ls9

View 6ls9 on RCSB PDB site
Description: crystal structure of bovine herpesvirus 1 glycoprotein d
Deposited on 2020-01-17, released 2020-06-17
The last revision was dated 2020-07-29, with a file datestamp of 2020-07-02.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: N/A
AEROSPACI score: 0.27 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Envelope glycoprotein D
    Species: Bovine alphaherpesvirus 1 [TaxId:10320]
    Gene: US6, gD, AAADCAAH_00066, BLEONNCJ_00068, BLPDLEPH_00067, DCJDKEDG_00068, DILPLKIK_00066, DJCKHMNK_00067, HMKIDIGP_00066, LALCDEHK_00068, NBBNDGNH_00066, NCKHNGOI_00066, NFOBEAPH_00067, OCMKPLLD_00067, OHMFJBFK_00067
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Envelope glycoprotein D
    Species: Bovine alphaherpesvirus 1 [TaxId:10320]
    Gene: US6, gD, AAADCAAH_00066, BLEONNCJ_00068, BLPDLEPH_00067, DCJDKEDG_00068, DILPLKIK_00066, DJCKHMNK_00067, HMKIDIGP_00066, LALCDEHK_00068, NBBNDGNH_00066, NCKHNGOI_00066, NFOBEAPH_00067, OCMKPLLD_00067, OHMFJBFK_00067
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Envelope glycoprotein D
    Species: Bovine alphaherpesvirus 1 [TaxId:10320]
    Gene: US6, gD, AAADCAAH_00066, BLEONNCJ_00068, BLPDLEPH_00067, DCJDKEDG_00068, DILPLKIK_00066, DJCKHMNK_00067, HMKIDIGP_00066, LALCDEHK_00068, NBBNDGNH_00066, NCKHNGOI_00066, NFOBEAPH_00067, OCMKPLLD_00067, OHMFJBFK_00067
    Database cross-references and differences (RAF-indexed):
  • Heterogens: NAG, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6ls9A (A:)
adeflptpaprvtvyvdppaypmprynyterwhttgpipspfadgreqpvevryatsaaa
cdmlaliadpqvgrtlweavrrharaynatviwykiesgcarplyymeyteceprkhfgy
cryrtppfwdsflagfayptddelglimaaparlvegqyrralyidgtvaytdfmvslpa
gdcwfsklgaargytfgacfpardyeqkkvlrltyltqyypqeahkaivdywfmrhggvv
ppyfeeskgyepppaadggspappgddearedegetedgaagregnggppgpegdgesqt
peanghhhhhh

    Sequence, based on observed residues (ATOM records):
    >6ls9A (A:)
paprvtvyvdppaypmprynyterwhttgpipspfaqpvevryatsaaacdmlaliadpq
vgrtlweavrrharaynatviwykiesgcarplyymeyteceprkhfgycryrtppfwds
flagfayptddelglimaaparlvegqyrralyidgtvaytdfmvslpagdcwfsklgaa
rgytfgacfpardyeqkkvlrltyltqyypqeahkaivdywfmrhggvvppyfeeskgye
p

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6ls9B (B:)
adeflptpaprvtvyvdppaypmprynyterwhttgpipspfadgreqpvevryatsaaa
cdmlaliadpqvgrtlweavrrharaynatviwykiesgcarplyymeyteceprkhfgy
cryrtppfwdsflagfayptddelglimaaparlvegqyrralyidgtvaytdfmvslpa
gdcwfsklgaargytfgacfpardyeqkkvlrltyltqyypqeahkaivdywfmrhggvv
ppyfeeskgyepppaadggspappgddearedegetedgaagregnggppgpegdgesqt
peanghhhhhh

    Sequence, based on observed residues (ATOM records):
    >6ls9B (B:)
prvtvyvdppaypmprynyterwhttgpipspfadqpvevryatsaaacdmlaliadpqv
grtlweavrrharaynatviwykiesgcarplyymeyteceprkhfgycryrtppfwdsf
lagfayptddelglimaaparlvegqyrralyidgtvaytdfmvslpagdcwfsklgaar
gytfgacfpardyeqkkvlrltyltqyypqeahkaivdywfmrhggvvppyfeeskgyep

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6ls9C (C:)
adeflptpaprvtvyvdppaypmprynyterwhttgpipspfadgreqpvevryatsaaa
cdmlaliadpqvgrtlweavrrharaynatviwykiesgcarplyymeyteceprkhfgy
cryrtppfwdsflagfayptddelglimaaparlvegqyrralyidgtvaytdfmvslpa
gdcwfsklgaargytfgacfpardyeqkkvlrltyltqyypqeahkaivdywfmrhggvv
ppyfeeskgyepppaadggspappgddearedegetedgaagregnggppgpegdgesqt
peanghhhhhh

    Sequence, based on observed residues (ATOM records):
    >6ls9C (C:)
aprvtvyvdppaypmprynyterwhttgpipspfaeqpvevryatsaaacdmlaliadpq
vgrtlweavrrharaynatviwykiesgcarplyymeyteceprkhfgycryrtppfwds
flagfayptddelglimaaparlvegqyrralyidgtvaytdfmvslpagdcwfsklgaa
rgytfgacfpardyeqkkvlrltyltqyypqeahkaivdywfmrhggvvppyfeeskgye