PDB entry 6lqf

View 6lqf on RCSB PDB site
Description: crystal structure of arabidopsis arid5 arid-phd cassette in complex with h3k4me3 peptide and dna
Deposited on 2020-01-13, released 2020-06-03
The last revision was dated 2020-08-19, with a file datestamp of 2020-08-14.
Experiment type: XRAY
Resolution: 1.5 Å
R-factor: N/A
AEROSPACI score: 0.57 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: AT-rich interactive domain-containing protein 4
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: ARID4, At3g43240, F7K15.90
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: DNA (5'-d(*tp*tp*tp*ap*gp*ap*tp*cp*tp*ap*ap*a)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'C':
    Compound: DNA (5'-d(*tp*tp*tp*ap*gp*ap*tp*cp*tp*ap*ap*a)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'P':
    Compound: 15-mer peptide from Histone H3.2
    Species: ARABIDOPSIS THALIANA, synthetic [TaxId:3702]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: M3L, ZN, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6lqfA (A:)
sqiislnplplkkhdcgrahiqvcseeeflrdvmqfllirghtrlvppgglaefpdavln
skrldlfnlyrevvsrggfhvgnginwkgqvfskmrnhtltnrmtgvgntlkrhyetyll
eyeyahddvdgecclicrsstagdwvncgscgewahfgcdrrpglgafkdyaktdgleyv
cpncsvsnyrkksqktsnggllvp

    Sequence, based on observed residues (ATOM records):
    >6lqfA (A:)
kkhdcgrahiqvcseeeflrdvmqfllirghtrlvppgglaefpdavlnskrldlfnlyr
evvsrggfhvgnginwkgqvfskmrnhtltnrmtgvgntlkrhyetylleyeyahddvdg
ecclicrsstagdwvncgscgewahfgcdrrpglgafkdyaktdgleyvcpncsv

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    No sequence available.

  • Chain 'P':
    Sequence, based on SEQRES records:
    >6lqfP (P:)
artkqtarkstggka

    Sequence, based on observed residues (ATOM records):
    >6lqfP (P:)
artkqt