PDB entry 6lqb

View 6lqb on RCSB PDB site
Description: A third intermediate state of L,D-transpeptidase LdtMt2-ertapenem adduct
Class: transferase
Keywords: ykud domain, l, d-transpeptidase, beta-lactam binding, transferase
Deposited on 2020-01-13, released 2021-01-13
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-07-28, with a file datestamp of 2021-07-23.
Experiment type: XRAY
Resolution: 1.7 Å
R-factor: N/A
AEROSPACI score: 0.48 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: L,D-transpeptidase 2
    Species: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) [TaxId:83332]
    Gene: ldtB, lppS, Rv2518c, RVBD_2518c, P425_02624
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6lqba1, d6lqba2
  • Chain 'B':
    Compound: L,D-transpeptidase 2
    Species: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) [TaxId:83332]
    Gene: ldtB, lppS, Rv2518c, RVBD_2518c, P425_02624
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6lqbb1, d6lqbb2
  • Heterogens: 2RG, GOL, ACY, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6lqbA (A:)
qltfqtsspahltmpyvmpgdgevvgvgepvairfdeniadrgaaekaikittnppvega
fywlnnrevrwrpehfwkpgtavdvavntygvdlgegmfgednvqthftigdeviatadd
ntkiltvrvngevvksmptsmgkdstptangiyivgsrykhiimdsstygvpvnspngyr
tdvdwatqisysgvfvhsapwsvgaqghtntshgclnvspsnaqwfydhvkrgdivevvn
tvggtlpgidglgdwnipwdqwragnaka

    Sequence, based on observed residues (ATOM records): (download) 
    >6lqbA (A:)
ltfqtsspahltmpyvmpgdgevvgvgepvairfdeniadrgaaekaikittnppvegaf
ywlnnrevrwrpehfwkpgtavdvavntygvdlgegmfgednvqthftigdeviataddn
tkiltvrvngevvksmptsmgkdstptangiyivgsrykhiimdsstygvpvnspngyrt
dvdwatqisysgvfvhsapwsvgaqghtntshgclnvspsnaqwfydhvkrgdivevvnt
vggtlpgidglgdwnipwdqwragnak

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6lqbB (B:)
qltfqtsspahltmpyvmpgdgevvgvgepvairfdeniadrgaaekaikittnppvega
fywlnnrevrwrpehfwkpgtavdvavntygvdlgegmfgednvqthftigdeviatadd
ntkiltvrvngevvksmptsmgkdstptangiyivgsrykhiimdsstygvpvnspngyr
tdvdwatqisysgvfvhsapwsvgaqghtntshgclnvspsnaqwfydhvkrgdivevvn
tvggtlpgidglgdwnipwdqwragnaka

    Sequence, based on observed residues (ATOM records): (download) 
    >6lqbB (B:)
tfqtsspahltmpyvmpgdgevvgvgepvairfdeniadrgaaekaikittnppvegafy
wlnnrevrwrpehfwkpgtavdvavntygvdlgegmfgednvqthftigdeviataddnt
kiltvrvngevvksmptsmgkdstptangiyivgsrykhiimdsstygvpvnspngyrtd
vdwatqisysgvfvhsapwsvgaqghtntshgclnvspsnaqwfydhvkrgdivevvntv
ggtlpgidglgdwnipwdqwragn