PDB entry 6lod

View 6lod on RCSB PDB site
Description: cryo-em structure of the air-oxidized photosynthetic alternative complex iii from roseiflexus castenholzii
Deposited on 2020-01-05, released 2020-11-04
The last revision was dated 2020-11-04, with a file datestamp of 2020-10-30.
Experiment type: EM
Resolution: 3.2 Å
R-factor: N/A
AEROSPACI score: 0.15 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: MULTIHEME_CYTC domain-containing protein
    Species: Roseiflexus castenholzii (strain DSM 13941 / HLO8) [TaxId:383372]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Fe-S-cluster-containing hydrogenase components 1-like protein
    Species: Roseiflexus castenholzii (strain DSM 13941 / HLO8) [TaxId:383372]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Polysulphide reductase NrfD
    Species: Roseiflexus castenholzii (strain DSM 13941 / HLO8) [TaxId:383372]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Uncharacterized protein ActD
    Species: Roseiflexus castenholzii (strain DSM 13941 / HLO8) [TaxId:383372]
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Cytochrome c domain-containing protein
    Species: Roseiflexus castenholzii (strain DSM 13941 / HLO8) [TaxId:383372]
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Uncharacterized protein ActF
    Species: Roseiflexus castenholzii (strain DSM 13941 / HLO8) [TaxId:383372]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: F3S, HEC, SF4, EL6

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6lodA (A:)
mlerrpmaqvfdrrantlarvsifagiplvlailggvwwlfgwsdwhrdvgveipqpggg
fnhqlhvalgmdcrychtavevsahanipptetcmgchsqiisrsekvafvwqswetgts
iqwnkvhdlpkfvyfnhsihvakgvgcstchgridqmrvvyktqplfmswcldchrnpek
yvrpreevfnmawtpppnqlevgrrlvqeyeirssweltncaichr

    Sequence, based on observed residues (ATOM records):
    >6lodA (A:)
qvfdrrantlarvsifagiplvlailggvwwlfgwsdwhrdvgveipqpgggfnhqlhva
lgmdcrychtavevsahanipptetcmgchsqiisrsekvafvwqswetgtsiqwnkvhd
lpkfvyfnhsihvakgvgcstchgridqmrvvyktqplfmswcldchrnpekyvrpreev
fnmawtpppnqlevgrrlvqeyeirssweltncaichr

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6lodB (B:)
cqfalkqpqekivpyvrqpeeiihgrplffatavtfagfgvgllveshegrptkiegnpd
hpaslgstdlitqamiltmydpdrsqaptnagqettwdafvaaataamqaqtakqgaglr
vlsgsltsptliaqkqqlltqfpqakwyeyepvgrdnanagarlafgadvhtiyrldtak
vivgfdadftapsptgvrmarqladgrrirkgtkevnrlylaestpsitglladhrlpvr
ssqiehlvralatlvgvpnvaagaplsdtekkwveaaakdlqanrgacvvlvgesqppvv
halghainaqlgnvgstvvytepveddpsggiaalsaltqemnagtvevllmiesnpvyn
apadipfaealakvplsmhvglyrdetaqqsvwhingahfleawgdvrafdgtttivqpl
iaplyngksaievlnvllgkpqetgyqtltaywqtqdasgnfrvfwntalhdgvitatqa
rsrqvtlqqgfadaappaptqgleivfrpdpslwdgafannawlqetpkpytkltwdnva
lmsvrtanalglkngdvvrltyqgrsvdapvwvqpghaddsvtvhfgfgrtaagrvgnnv
gfnayrlrtsatpwfgvglevakvgenyklastqghflmegrkkdlvrygtlaeyvedek
flqvekeepisligeyeyngykwgmsidlnvcnscnacvvacqsennipvvgkdevwlgr
emhwiridqyyvgdehtpnvynmvmlcqqcehapceivcpvaatvhdaeglnnmvynrcv
gtkycsnncpykvrrfnflqyqdvpyrspidastendsipvlkmmrnpdvtvrargvmek
ctfcvqrineariqartenrriadgeimtacqqvcptqaivfgdlndpqarvvdlkeqpl
kytsldklntkprvsylakiknlnpdlaeekta

    Sequence, based on observed residues (ATOM records):
    >6lodB (B:)
cqfalkqpqekivpyvrqpeeiihgrplffatavtfagfgvgllveshegrptkiegnpd
hpaslgstdlitqamiltmydpdrsqaptnagqettwdafvaaataamqaqtakqgaglr
vlsgsltsptliaqkqqlltqfpqakwyeyepvgrdnanagarlafgadvhtiyrldtak
vivgfdadftapsptgvrmarqladgrrirkgtkevnrlylaestpsitglladhrlpvr
ssqiehlvralatlvgvpnvaagaplsdtekkwveaaakdlqanrgacvvlvgesqppvv
halghainaqlgnvgstvvytepveddpsggiaalsaltqemnagtvevllmiesnpvyn
apadipfaealakvplsmhvglyrdetaqqsvwhingahfleawgdvrafdgtttivqpl
iaplyngksaievlnvllgkpqetgyqtltaywqtqdasgnfrvfwntalhdgvitatqa
rsrqvtlqqgfadaappaptqgleivfrpdpslwdgafannawlqetpkpytkltwdnva
lmsvrtanalglkngdvvrltyqgrsvdapvwvqpghaddsvtvhfgfgrtaagrvgnnv
gfnayrlrtsatpwfgvglevakvgenyklastqghflmegrkkdlvrygtlaeyvedek
flqvekeepisligeyeyngykwgmsidlnvcnscnacvvacqsennipvvgkdevwlgr
emhwiridqyyvgdehtpnvynmvmlcqqcehapceivcpvaatvhdaeglnnmvynrcv
gtkycsnncpykvrrfnflqyqdvpyrspidastendsipvlkmmrnpdvtvrargvmek
ctfcvqrineariqartenrriadgeimtacqqvcptqaivfgdlndpqarvvdlkeqpl
kytsldklntkprvsylakiknlnpdlae

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6lodC (C:)
masqpaqksaygkmleellgpkqtyesvtrtigdivltpirktpwgwpvgfviaalgllm
ylfslavlftvgvgvwginipvawgfdiinfvwwigighagtlisailllfrqdwrtsin
raaeamtifavacagiyplvhtgrpwldywmlpypgtlgmwpqfrsalewdvfaistyat
vsilfwylglipdlaslrdratniwvkrfygflalgwrggardwnryevaslilaglstp
lvlsvhsiisldfaisqlpgwhvtvfppyfvagavycgfamvilllvplrrwyklhdlit
ikhfdlmgkvmlasglvvaygyfaeifyawysaniyeyflitnrtmgpyawsywalivln
vaipqllwfkrfrvslpwlffisicinigmwferwviivlslhrdflpsswgyytpsvwd
islyagsfgwffflfflfirllpaisifevrdlvhktetekalahgsaghh

    Sequence, based on observed residues (ATOM records):
    >6lodC (C:)
saygkmleellgpkqtyesvtrtigdivltpirktpwgwpvgfviaalgllmylfslavl
ftvgvgvwginipvawgfdiinfvwwigighagtlisailllfrqdwrtsinraaeamti
favacagiyplvhtgrpwldywmlpypgtlgmwpqfrsalewdvfaistyatvsilfwyl
glipdlaslrdratniwvkrfygflalgwrggardwnryevaslilaglstplvlsvhsi
isldfaisqlpgwhvtvfppyfvagavycgfamvilllvplrrwyklhdlitikhfdlmg
kvmlasglvvaygyfaeifyawysaniyeyflitnrtmgpyawsywalivlnvaipqllw
fkrfrvslpwlffisicinigmwferwviivlslhrdflpsswgyytpsvwdislyagsf
gwffflfflfirllpaisifevrdlvhktetekala

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6lodD (D:)
mlkrnarqpkalkvstgptlyglmaefddaeallaaaektrdagykqfeaytpmpihgld
eavgyrgtrlpwvifgagllgasgmfalqtwinlveyplniggrplfswpafipatfegm
vllsafaavfgmiaacglprpyhpvfnapnferasvdrfflcieaadpkfelkqtrqfle
slgplavstvdn

    Sequence, based on observed residues (ATOM records):
    >6lodD (D:)
tlyglmaefddaeallaaaektrdagykqfeaytpmpihgldeavgyrgtrlpwvifgag
llgasgmfalqtwinlveyplniggrplfswpafipatfegmvllsafaavfgmiaacgl
prpyhpvfnapnferasvdrfflcieaadpkfelkqtrqfleslgplavstvdn

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6lodE (E:)
chlemydqakykpqqaseifadgasarplvehtvargrlridatstgrvdgdpngayvtt
ipiritpellergaqryriycavchgvngngrgqvglllnprppsfydqrlldmpdgeyy
dvlvngrrtmypygyrvqsisdrwaivahirelqknpppqn

    Sequence, based on observed residues (ATOM records):
    >6lodE (E:)
chlemydqakykpqqaseifadgasarplvehtvargrlridatstgrvdgdpngayvtt
ipiritpellergaqryriycavchgvngngrgqvglllnprppsfydqrlldmpdgeyy
dvlvngrrtmypygyrvqsisdrwaivahirelqknp

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6lodF (F:)
miaqepaalrpalgrlqqvalivggvamllavagaflgaaqffhsyifayffwmalslgg
llvlminhltqgvwglmlrrlleaaaltlplmailflpiaaetlmgthylfpwtnpevva
ndevvalktpylnvpfflaraviyfvlfigmayllrqwsleedakgfsddlrgrfqrlsg
pgivvlvmawtfaatdwgmslepewfssmypvtyiasmliltfgggiialavlksrnllp
fgipvdrlhdlgkflfafvavwayvnfseyliiwsgnvpeltpwhghrsaggweilgivm
ifghfllpfmlllsrfakrrlanltaiaiylylieivwyfwkimpafhpdgfhihwldlv
tliaigglwlgvfawnlqrapllapndyrvpllrrqeasghghghhgkataehh

    Sequence, based on observed residues (ATOM records):
    >6lodF (F:)
epaalrpalgrlqqvalivggvamllavagaflgaaqffhsyifayffwmalslggllvl
minhltqgvwglmlrrlleaaaltlplmailflpiaaetlmgthylfpwtnpevvandev
valktpylnvpfflaraviyfvlfigmayllrqwsleedakgfsddlrgrfqrlsgpgiv
vlvmawtfaatdwgmslepewfssmypvtyiasmliltfgggiialavlksrnllpfgip
vdrlhdlgkflfafvavwayvnfseyliiwsgnvpeltpwhghrsaggweilgivmifgh
fllpfmlllsrfakrrlanltaiaiylylieivwyfwkimpafhpdgfhihwldlvtlia
igglwlgvfawnlqrapllapndyrvpllrrqeas