PDB entry 6lnc

View 6lnc on RCSB PDB site
Description: cryoem structure of cascade-tniq complex
Deposited on 2019-12-28, released 2020-02-19
The last revision was dated 2020-02-19, with a file datestamp of 2020-02-14.
Experiment type: EM
Resolution: 3.21 Å
R-factor: N/A
AEROSPACI score: 0.11 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: CRISPR-associated protein Cas6
    Species: Vibrio cholerae [TaxId:666]
    Database cross-references and differences (RAF-indexed):
    • PDB 6LNC
  • Chain 'B':
    Compound: CRISPR-associated protein Cas7
    Species: Vibrio cholerae [TaxId:666]
    Database cross-references and differences (RAF-indexed):
    • PDB 6LNC
  • Chain 'C':
    Compound: CRISPR-associated protein Cas7
    Species: Vibrio cholerae [TaxId:666]
    Database cross-references and differences (RAF-indexed):
    • PDB 6LNC
  • Chain 'D':
    Compound: CRISPR-associated protein Cas7
    Species: Vibrio cholerae [TaxId:666]
    Database cross-references and differences (RAF-indexed):
    • PDB 6LNC
  • Chain 'E':
    Compound: CRISPR-associated protein Cas7
    Species: Vibrio cholerae [TaxId:666]
    Database cross-references and differences (RAF-indexed):
    • PDB 6LNC
  • Chain 'F':
    Compound: CRISPR-associated protein Cas7
    Species: Vibrio cholerae [TaxId:666]
    Database cross-references and differences (RAF-indexed):
    • PDB 6LNC
  • Chain 'G':
    Compound: CRISPR-associated protein Cas7
    Species: Vibrio cholerae [TaxId:666]
    Database cross-references and differences (RAF-indexed):
    • PDB 6LNC
  • Chain 'H':
    Compound: CRISPR-associated protein Cas8
    Species: Vibrio cholerae [TaxId:666]
    Database cross-references and differences (RAF-indexed):
    • PDB 6LNC
  • Chain 'I':
    Compound: Transposition protein TniQ
    Species: Vibrio cholerae [TaxId:666]
    Database cross-references and differences (RAF-indexed):
    • PDB 6LNC (0-393)
  • Chain 'J':
    Compound: Transposition protein TniQ
    Species: Vibrio cholerae [TaxId:666]
    Database cross-references and differences (RAF-indexed):
    • PDB 6LNC (0-393)
  • Chain 'M':
    Compound: crispr RNA (60-mer)
    Species: Vibrio cholerae [TaxId:666]

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6lncA (A:)
vkwyyktitflpelcnneslaakclrvlhgfnyqyetrnigvsfplwcdatvgkkisfvs
knkieldlllkqhyfvqmeqlqyfhisntvlvpedctyvsfrrcqsidkltaaglarkir
rlekralsrgeqfdpssfaqkehtaiahyhslgesskqtnrnfrlnirmlseqpregnsi
fssyglsnsensfqpvpli

    Sequence, based on observed residues (ATOM records):
    >6lncA (A:)
kwyyktitflpelcnneslaakclrvlhgfnyqyetrnigvsfplwcdatvgkkisfvsk
nkieldlllkqhyfvqmeqlqyfhisntvlvpedctyvsfrrcqsidkltaaglarkirr
lekralsrgeqfdpssfaqkehtaiahyhslgesskqtnrnfrlnirmlseqpregnsif
ssyglsnsensfqpvpl

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6lncB (B:)
gsmklptnlayersidpsdvcffvvwpddrktpltynsrtllgqmeaaslaydvsgqpik
sataealaqgnphqvdfchvpygashiecsfsvsfsselrqpykcnsskvkqtlvqlvel
yetkigwtelatrylmnicngkwlwkntrkaycwnivltpwpwngekvgfedirtnytsr
qdfknnknwsaivemiktafsstdglaifevratlhlptnamvrpsqvftekesgsksks
ktqnsrvfqsttidgerspilgafktgaaiatiddwypeateplrvgrfgvhredvtcyr
hpstgkdffsilqqaehyievlsanktpaqetindmhflmanlikggmfqhkgd

    Sequence, based on observed residues (ATOM records):
    >6lncB (B:)
klptnlayersidpsdvcffvvwpddrktpltynsrtllgqmphqvdfchvpygashiec
sfsvsfsselrqpykcnsskvkqtlvqlvelyetkigwtelatrylmnicngkwlwkntr
kaycwnivltpwpwngekvgfedirtnytsrqdfknnknwsaivemiktafsstdglaif
evratlhlptnamvrpsqvftesrvfqsttidgerspilgafktgaaiatiddwypeate
plrvgrfgvhredvtcyrhpstgkdffsilqqaehyievlsanktpaqetindmhflman
likggmfqh

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6lncC (C:)
gsmklptnlayersidpsdvcffvvwpddrktpltynsrtllgqmeaaslaydvsgqpik
sataealaqgnphqvdfchvpygashiecsfsvsfsselrqpykcnsskvkqtlvqlvel
yetkigwtelatrylmnicngkwlwkntrkaycwnivltpwpwngekvgfedirtnytsr
qdfknnknwsaivemiktafsstdglaifevratlhlptnamvrpsqvftekesgsksks
ktqnsrvfqsttidgerspilgafktgaaiatiddwypeateplrvgrfgvhredvtcyr
hpstgkdffsilqqaehyievlsanktpaqetindmhflmanlikggmfqhkgd

    Sequence, based on observed residues (ATOM records):
    >6lncC (C:)
klptnlayersidpsdvcffvvwpddrktpltynsrtllgqmeaaslaydvsgqpiksat
aealaqgnphqvdfchvpygashiecsfsvsfsselrqpykcnsskvkqtlvqlvelyet
kigwtelatrylmnicngkwlwkntrkaycwnivltpwpwngekvgfedirtnytsrqdf
knnknwsaivemiktafsstdglaifevratlhlptnamvrpsqvfteqnsrvfqsttid
gerspilgafktgaaiatiddwypeateplrvgrfgvhredvtcyrhpstgkdffsilqq
aehyievlsanktpaqetindmhflmanlikggmfqh

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6lncD (D:)
gsmklptnlayersidpsdvcffvvwpddrktpltynsrtllgqmeaaslaydvsgqpik
sataealaqgnphqvdfchvpygashiecsfsvsfsselrqpykcnsskvkqtlvqlvel
yetkigwtelatrylmnicngkwlwkntrkaycwnivltpwpwngekvgfedirtnytsr
qdfknnknwsaivemiktafsstdglaifevratlhlptnamvrpsqvftekesgsksks
ktqnsrvfqsttidgerspilgafktgaaiatiddwypeateplrvgrfgvhredvtcyr
hpstgkdffsilqqaehyievlsanktpaqetindmhflmanlikggmfqhkgd

    Sequence, based on observed residues (ATOM records):
    >6lncD (D:)
mklptnlayersidpsdvcffvvwpddrktpltynsrtllgqmeaaslaydvsgqpiksa
taealaqgnphqvdfchvpygashiecsfsvsfsselrqpykcnsskvkqtlvqlvelye
tkigwtelatrylmnicngkwlwkntrkaycwnivltpwpwngekvgfedirtnytsrqd
fknnknwsaivemiktafsstdglaifevratlhlptnamvrpsqvfteqnsrvfqstti
dgerspilgafktgaaiatiddwypeateplrvgrfgvhredvtcyrhpstgkdffsilq
qaehyievlsanktpaqetindmhflmanlikggmfqh

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6lncE (E:)
gsmklptnlayersidpsdvcffvvwpddrktpltynsrtllgqmeaaslaydvsgqpik
sataealaqgnphqvdfchvpygashiecsfsvsfsselrqpykcnsskvkqtlvqlvel
yetkigwtelatrylmnicngkwlwkntrkaycwnivltpwpwngekvgfedirtnytsr
qdfknnknwsaivemiktafsstdglaifevratlhlptnamvrpsqvftekesgsksks
ktqnsrvfqsttidgerspilgafktgaaiatiddwypeateplrvgrfgvhredvtcyr
hpstgkdffsilqqaehyievlsanktpaqetindmhflmanlikggmfqhkgd

    Sequence, based on observed residues (ATOM records):
    >6lncE (E:)
klptnlayersidpsdvcffvvwpddrktpltynsrtllgqmeaaslaydvsgqpiksat
aealaqgnphqvdfchvpygashiecsfsvsfsselrqpykcnsskvkqtlvqlvelyet
kigwtelatrylmnicngkwlwkntrkaycwnivltpwpwngekvgfedirtnytsrqdf
knnknwsaivemiktafsstdglaifevratlhlptnamvrpsqvfteqnsrvfqsttid
gerspilgafktgaaiatiddwypeateplrvgrfgvhredvtcyrhpstgkdffsilqq
aehyievlsanktpaqetindmhflmanlikggmfqh

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6lncF (F:)
gsmklptnlayersidpsdvcffvvwpddrktpltynsrtllgqmeaaslaydvsgqpik
sataealaqgnphqvdfchvpygashiecsfsvsfsselrqpykcnsskvkqtlvqlvel
yetkigwtelatrylmnicngkwlwkntrkaycwnivltpwpwngekvgfedirtnytsr
qdfknnknwsaivemiktafsstdglaifevratlhlptnamvrpsqvftekesgsksks
ktqnsrvfqsttidgerspilgafktgaaiatiddwypeateplrvgrfgvhredvtcyr
hpstgkdffsilqqaehyievlsanktpaqetindmhflmanlikggmfqhkgd

    Sequence, based on observed residues (ATOM records):
    >6lncF (F:)
klptnlayersidpsdvcffvvwpddrktpltynsrtllgqmeaaslaydvsgqpiksat
aealaqgnphqvdfchvpygashiecsfsvsfsselrqpykcnsskvkqtlvqlvelyet
kigwtelatrylmnicngkwlwkntrkaycwnivltpwpwngekvgfedirtnytsrqdf
knnknwsaivemiktafsstdglaifevratlhlptnamvrpsqvfteqnsrvfqsttid
gerspilgafktgaaiatiddwypeateplrvgrfgvhredvtcyrhpstgkdffsilqq
aehyievlsatpaqetindmhflmanlikggmfqhk

  • Chain 'G':
    Sequence, based on SEQRES records:
    >6lncG (G:)
gsmklptnlayersidpsdvcffvvwpddrktpltynsrtllgqmeaaslaydvsgqpik
sataealaqgnphqvdfchvpygashiecsfsvsfsselrqpykcnsskvkqtlvqlvel
yetkigwtelatrylmnicngkwlwkntrkaycwnivltpwpwngekvgfedirtnytsr
qdfknnknwsaivemiktafsstdglaifevratlhlptnamvrpsqvftekesgsksks
ktqnsrvfqsttidgerspilgafktgaaiatiddwypeateplrvgrfgvhredvtcyr
hpstgkdffsilqqaehyievlsanktpaqetindmhflmanlikggmfqhkgd

    Sequence, based on observed residues (ATOM records):
    >6lncG (G:)
mklptnlayersidpsdvcffvvwpddrktpltynsrtllgqmeaaslaydvsgqpatae
alaqgnphqvdfchvpygashiecsfsvsfsselrqpykcnsskvkqtlvqlvelyetki
gwtelatrylmnicngkwlwkntrkaycwnivltpwpwngekvgfedirtnytsrqdfkn
nknwsaivemiktafsstdglaifevratlhlptnamvrpsqvftetqnsrvfqsttidg
erspilgafktgaaiatiddwypeateplrvgrfgvhredvtcyrhpstgkdffsilqqa
ehyievlsanktpaqetindmhflmanlikggmfqhk

  • Chain 'H':
    Sequence, based on SEQRES records:
    >6lncH (H:)
mqtlkeliasnpddlttelkrafrpltphiaidgneldaltilvnltdktddqkdlldra
kckqklrdekwwascincvnyrqshnpkfpdirsegvirtqalgelpsfllssskippyh
wsyshdskyvnksafltnefcwdgeisclgellkdadhplwntlkklgcsqktckamakq
laditlttinvtlapnyltqislpdsdtsyislspvaslsmqshfhqrlqdenrhsaitr
fsrttnmgvtamtcggafrmlksgakfsspphhrlnskrswltsehvqslkqyqrlnksl
ipensrialrrkykielqnmvrswfamqdhtldsniliqhlnhdlsylgatkrfaydpam
tklftellkrelsnsinngeqhtngsflvlpnirvcgatalsspvtvgipsltaffgfvh
aferninrttssfrvesfaicvhqlhvekrgltaefvekgdgtisapatrddwqcdvvfs
lilntnfaqhidqdtlvtslpkrlargsakiaiddfkhinsfstletaieslpieagrwl
slyaqsnnnlsdllaamtedhqlmascvgyhlleepkdkpnslrgykhaiaeciiglins
itfssetdpntifwslknyqnylvvqprsindettdkssl

    Sequence, based on observed residues (ATOM records):
    >6lncH (H:)
lkeliasnpddlttelkrafrpltphiaidgneldaltilvnltdakckqklrdekwwas
cincvnyrqshnpkfpdirsegvirtqalgelpsfllssskippyhwsyshdskyvnksa
fltnefcwdgeisclgellkdadhplwntlkklgcsqktckamakqladitlttinvtla
pnyltqislpdsdtsyislspvaslsmqshfhqrlqdenrhsaitrfsrttnmgvtamtc
ggafrmlksgakfsspphhrlnngsflvlpnirvcgatalsspvtvgipsltaffgfvha
ferninrttssfrvesfaicvhqlhvekrgltaefvekgdgtisapatrddwqcdvvfsl
ilntnfaqhidqdtlvtslpkrlargsakiaiddfkhinsfstletaieslpieagrwls
lyaqsnnnlsdllaamtedhqlmascvgyhlleepkdkpnslrgykhaiaeciiglinsi
tftdpntifwslknyqnylvvqpr

  • Chain 'I':
    Sequence, based on SEQRES records:
    >6lncI (I:)
mflqrpkpysdeslesffirvankngygdvhrfleatkrflqdidhngyqtfptditrin
pysaknsssartasflklaqltfneppellglainrtnmkyspstsavvrgaevfprsll
rthsipccplclrengyasylwhfqgyeychshnvplittcscgkefdyrvsglkgicck
ckepitltsrengheaactvsnwlagheskplpnlpksyrwglvhwwmgikdsefdhfsf
vqffsnwprsfhsiiedevefnlehavvstselrlkdllgrlffgsirlpernlqhniil
gellcylenrlwqdkglianlkmnaleatvmlncsldqiasmveqrilkpnrkskpnspl
dvtdylfhfgdifclwlaefqsdefnrsfyvsrw

    Sequence, based on observed residues (ATOM records):
    >6lncI (I:)
mflqrpkpysdeslesffirvankngygdvhrfleatkrflqdidhngyqtfptditrin
pysaknsssartasflklaqltfneppellglainrtnmkyspstsavvrgaevfprsll
rthsipccplclrengyasylwhfqgyeychshnvplittcscgkefdyrvsglkgicck
ckepieaactvsnwlagheskplpnlpksyrwglvhwwmgikdsefdhfsfvqffsnwpr
sfhsiiedevefnlehavvstselrlkdllgrlffgsirlpernlqhniilgellcylen
rlwqdkglianlkmnaleatvmlncsldqiasmveqrilkpndvtdylfhfgdifclwla
efqsdefnrsfyvsrw

  • Chain 'J':
    Sequence, based on SEQRES records:
    >6lncJ (J:)
mflqrpkpysdeslesffirvankngygdvhrfleatkrflqdidhngyqtfptditrin
pysaknsssartasflklaqltfneppellglainrtnmkyspstsavvrgaevfprsll
rthsipccplclrengyasylwhfqgyeychshnvplittcscgkefdyrvsglkgicck
ckepitltsrengheaactvsnwlagheskplpnlpksyrwglvhwwmgikdsefdhfsf
vqffsnwprsfhsiiedevefnlehavvstselrlkdllgrlffgsirlpernlqhniil
gellcylenrlwqdkglianlkmnaleatvmlncsldqiasmveqrilkpnrkskpnspl
dvtdylfhfgdifclwlaefqsdefnrsfyvsrw

    Sequence, based on observed residues (ATOM records):
    >6lncJ (J:)
mflqrpkpysdeslesffirvankngygdvhrfleatkrflqdidhngyqtfptditrin
pysaknsssartasflklaqltfneppellglainrtnmkyspstsavvrgaevfprsll
rthsipccplclrengyasylwhfqgyeychshnvplittcscgkefdyrvsglkgicck
ckepieaactvsnwlagheskplpnlpksyrwglvhwwmgikdsefdhfsfvqffsnwpr
sfhsiiedevefnlehavvstselrlkdllgrlffgsirlpernlqhniilgellcylen
rlwqdkglianlkmnaleatvmlncsldqiasmveqrilkpndvtdylfhfgdifclwla
efqsdefnrsfyvsrw

  • Chain 'M':
    No sequence available.