PDB entry 6lnb

View 6lnb on RCSB PDB site
Description: cryoem structure of cascade-tniq-dsdna complex
Deposited on 2019-12-28, released 2020-02-19
The last revision was dated 2020-02-19, with a file datestamp of 2020-02-14.
Experiment type: EM
Resolution: 3.18 Å
R-factor: N/A
AEROSPACI score: 0.12 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: CRISPR-associated protein Cas6
    Species: Vibrio cholerae [TaxId:666]
    Database cross-references and differences (RAF-indexed):
    • PDB 6LNB
  • Chain 'B':
    Compound: CRISPR-associated protein Cas7
    Species: Vibrio cholerae [TaxId:666]
    Database cross-references and differences (RAF-indexed):
    • PDB 6LNB
  • Chain 'C':
    Compound: CRISPR-associated protein Cas7
    Species: Vibrio cholerae [TaxId:666]
    Database cross-references and differences (RAF-indexed):
    • PDB 6LNB
  • Chain 'D':
    Compound: CRISPR-associated protein Cas7
    Species: Vibrio cholerae [TaxId:666]
    Database cross-references and differences (RAF-indexed):
    • PDB 6LNB
  • Chain 'E':
    Compound: CRISPR-associated protein Cas7
    Species: Vibrio cholerae [TaxId:666]
    Database cross-references and differences (RAF-indexed):
    • PDB 6LNB
  • Chain 'F':
    Compound: CRISPR-associated protein Cas7
    Species: Vibrio cholerae [TaxId:666]
    Database cross-references and differences (RAF-indexed):
    • PDB 6LNB
  • Chain 'G':
    Compound: CRISPR-associated protein Cas7
    Species: Vibrio cholerae [TaxId:666]
    Database cross-references and differences (RAF-indexed):
    • PDB 6LNB (Start-353)
  • Chain 'H':
    Compound: CRISPR-associated protein Cas8
    Species: Vibrio cholerae [TaxId:666]
    Database cross-references and differences (RAF-indexed):
    • PDB 6LNB
  • Chain 'I':
    Compound: Transposition protein TniQ
    Species: Vibrio cholerae [TaxId:666]
    Database cross-references and differences (RAF-indexed):
    • PDB 6LNB (0-393)
  • Chain 'J':
    Compound: Transposition protein TniQ
    Species: Vibrio cholerae [TaxId:666]
    Database cross-references and differences (RAF-indexed):
    • PDB 6LNB (0-End)
  • Chain 'M':
    Compound: crispr RNA (60-mer)
    Species: Vibrio cholerae [TaxId:666]
  • Chain 'N':
    Compound: Target DNA strand (51-MER)
    Species: Escherichia coli, synthetic [TaxId:562]
  • Chain 'O':
    Compound: Non-target DNA strand (51-MER)
    Species: Escherichia coli, synthetic [TaxId:562]

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6lnbA (A:)
vkwyyktitflpelcnneslaakclrvlhgfnyqyetrnigvsfplwcdatvgkkisfvs
knkieldlllkqhyfvqmeqlqyfhisntvlvpedctyvsfrrcqsidkltaaglarkir
rlekralsrgeqfdpssfaqkehtaiahyhslgesskqtnrnfrlnirmlseqpregnsi
fssyglsnsensfqpvpli

    Sequence, based on observed residues (ATOM records):
    >6lnbA (A:)
kwyyktitflpelcnneslaakclrvlhgfnyqyetrnigvsfplwcdatvgkkisfvsk
nkieldlllkqhyfvqmeqlqyfhisntvlvpedctyvsfrrcqsidkltaaglarkirr
lekralsrgeqfdpssfaqkehtaiahyhslgesskqtnrnfrlnirmlseqpregnsif
ssyglsnsensfqpvpl

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6lnbB (B:)
gsmklptnlayersidpsdvcffvvwpddrktpltynsrtllgqmeaaslaydvsgqpik
sataealaqgnphqvdfchvpygashiecsfsvsfsselrqpykcnsskvkqtlvqlvel
yetkigwtelatrylmnicngkwlwkntrkaycwnivltpwpwngekvgfedirtnytsr
qdfknnknwsaivemiktafsstdglaifevratlhlptnamvrpsqvftekesgsksks
ktqnsrvfqsttidgerspilgafktgaaiatiddwypeateplrvgrfgvhredvtcyr
hpstgkdffsilqqaehyievlsanktpaqetindmhflmanlikggmfqhkgd

    Sequence, based on observed residues (ATOM records):
    >6lnbB (B:)
klptnlayersidpsdvcffvvwpddrktpltynsrtphqvdfchvpygashiecsfsvs
fsselrqpykcnsskvkqtlvqlvelyetkigwtelatrylmnicngkwlwkntrkaycw
nivltpwpwngekvgfedirtnytsrqdfknnknwsaivemiktafsstdglaifevrat
lhlptnamvrpsqvfteksrvfqsttidgerspilgafktgaaiatiddwypeateplrv
grfgvhredvtcyrhpstgkdffsilqqaehyievlspaqetindmhflmanlikggmfq
h

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6lnbC (C:)
gsmklptnlayersidpsdvcffvvwpddrktpltynsrtllgqmeaaslaydvsgqpik
sataealaqgnphqvdfchvpygashiecsfsvsfsselrqpykcnsskvkqtlvqlvel
yetkigwtelatrylmnicngkwlwkntrkaycwnivltpwpwngekvgfedirtnytsr
qdfknnknwsaivemiktafsstdglaifevratlhlptnamvrpsqvftekesgsksks
ktqnsrvfqsttidgerspilgafktgaaiatiddwypeateplrvgrfgvhredvtcyr
hpstgkdffsilqqaehyievlsanktpaqetindmhflmanlikggmfqhkgd

    Sequence, based on observed residues (ATOM records):
    >6lnbC (C:)
klptnlayersidpsdvcffvvwpddrktpltynsrtllgqmeaaslaydvsgqpiksat
aealaqgnphqvdfchvpygashiecsfsvsfsselrqpykcnsskvkqtlvqlvelyet
kigwtelatrylmnicngkwlwkntrkaycwnivltpwpwngekvgfedirtnytsrqdf
knnknwsaivemiktafsstdglaifevratlhlptnamvrpsqvftesrvfqsttidge
rspilgafktgaaiatiddwypeateplrvgrfgvhredvtcyrhpstgkdffsilqqae
hyievlstpaqetindmhflmanlikggmfqhk

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6lnbD (D:)
gsmklptnlayersidpsdvcffvvwpddrktpltynsrtllgqmeaaslaydvsgqpik
sataealaqgnphqvdfchvpygashiecsfsvsfsselrqpykcnsskvkqtlvqlvel
yetkigwtelatrylmnicngkwlwkntrkaycwnivltpwpwngekvgfedirtnytsr
qdfknnknwsaivemiktafsstdglaifevratlhlptnamvrpsqvftekesgsksks
ktqnsrvfqsttidgerspilgafktgaaiatiddwypeateplrvgrfgvhredvtcyr
hpstgkdffsilqqaehyievlsanktpaqetindmhflmanlikggmfqhkgd

    Sequence, based on observed residues (ATOM records):
    >6lnbD (D:)
klptnlayersidpsdvcffvvwpddrktpltynsrtllgqmeaaslaydvsgqpiksat
aealaqgnphqvdfchvpygashiecsfsvsfsselrqpykcnsskvkqtlvqlvelyet
kigwtelatrylmnicngkwlwkntrkaycwnivltpwpwngekvgfedirtnytsrqdf
knnknwsaivemiktafsstdglaifevratlhlptnamvrpsqvftqnsrvfqsttidg
erspilgafktgaaiatiddwypeateplrvgrfgvhredvtcyrhpstgkdffsilqqa
ehyievlsanktpaqetindmhflmanlikggmfqh

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6lnbE (E:)
gsmklptnlayersidpsdvcffvvwpddrktpltynsrtllgqmeaaslaydvsgqpik
sataealaqgnphqvdfchvpygashiecsfsvsfsselrqpykcnsskvkqtlvqlvel
yetkigwtelatrylmnicngkwlwkntrkaycwnivltpwpwngekvgfedirtnytsr
qdfknnknwsaivemiktafsstdglaifevratlhlptnamvrpsqvftekesgsksks
ktqnsrvfqsttidgerspilgafktgaaiatiddwypeateplrvgrfgvhredvtcyr
hpstgkdffsilqqaehyievlsanktpaqetindmhflmanlikggmfqhkgd

    Sequence, based on observed residues (ATOM records):
    >6lnbE (E:)
klptnlayersidpsdvcffvvwpddrktpltynsrtllgqmeaaslaydvsgqpiksat
aealaqgnphqvdfchvpygashiecsfsvsfsselrqpykcnsskvkqtlvqlvelyet
kigwtelatrylmnicngkwlwkntrkaycwnivltpwpwngekvgfedirtnytsrqdf
knnknwsaivemiktafsstdglaifevratlhlptnamvrpsqvfteknsrvfqsttid
gerspilgafktgaaiatiddwypeateplrvgrfgvhredvtcyrhpstgkdffsilqq
aehyievlsapaqetindmhflmanlikggmfqhk

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6lnbF (F:)
gsmklptnlayersidpsdvcffvvwpddrktpltynsrtllgqmeaaslaydvsgqpik
sataealaqgnphqvdfchvpygashiecsfsvsfsselrqpykcnsskvkqtlvqlvel
yetkigwtelatrylmnicngkwlwkntrkaycwnivltpwpwngekvgfedirtnytsr
qdfknnknwsaivemiktafsstdglaifevratlhlptnamvrpsqvftekesgsksks
ktqnsrvfqsttidgerspilgafktgaaiatiddwypeateplrvgrfgvhredvtcyr
hpstgkdffsilqqaehyievlsanktpaqetindmhflmanlikggmfqhkgd

    Sequence, based on observed residues (ATOM records):
    >6lnbF (F:)
mklptnlayersidpsdvcffvvwpddrktpltynsrtllgqmeaaslaydvsgqpiksa
taealaqgnphqvdfchvpygashiecsfsvsfsselrqpykcnsskvkqtlvqlvelye
tkigwtelatrylmnicngkwlwkntrkaycwnivltpwpwngekvgfedirtnytsrqd
fknnknwsaivemiktafsstdglaifevratlhlptnamvrpsqvftqnsrvfqsttid
gerspilgafktgaaiatiddwypeateplrvgrfgvhredvtcyrhpstgkdffsilqq
aehyievlsktpaqetindmhflmanlikggmfqhk

  • Chain 'G':
    Sequence, based on SEQRES records:
    >6lnbG (G:)
gsmklptnlayersidpsdvcffvvwpddrktpltynsrtllgqmeaaslaydvsgqpik
sataealaqgnphqvdfchvpygashiecsfsvsfsselrqpykcnsskvkqtlvqlvel
yetkigwtelatrylmnicngkwlwkntrkaycwnivltpwpwngekvgfedirtnytsr
qdfknnknwsaivemiktafsstdglaifevratlhlptnamvrpsqvftekesgsksks
ktqnsrvfqsttidgerspilgafktgaaiatiddwypeateplrvgrfgvhredvtcyr
hpstgkdffsilqqaehyievlsanktpaqetindmhflmanlikggmfqhkgd

    Sequence, based on observed residues (ATOM records):
    >6lnbG (G:)
klptnlayersidpsdvcffvvwpddrktpltynsrtllgqmeaaslaydvsgqpiksat
aealaqgnphqvdfchvpygashiecsfsvsfsselrqpykcnsskvkqtlvqlvelyet
kigwtelatrylmnicngkwlwkntrkaycwnivltpwpwngekvgfedirtnytsrqdf
knnknwsaivemiktafsstdglaifevratlhlptnamvrpsqvftektqnsrvfqstt
idgerspilgafktgaaiatiddwypeateplrvgrfgvhredvtcyrhpstgkdffsil
qqaehyievlsanktpaqetindmhflmanlikggmfqhkgd

  • Chain 'H':
    Sequence, based on SEQRES records:
    >6lnbH (H:)
mqtlkeliasnpddlttelkrafrpltphiaidgneldaltilvnltdktddqkdlldra
kckqklrdekwwascincvnyrqshnpkfpdirsegvirtqalgelpsfllssskippyh
wsyshdskyvnksafltnefcwdgeisclgellkdadhplwntlkklgcsqktckamakq
laditlttinvtlapnyltqislpdsdtsyislspvaslsmqshfhqrlqdenrhsaitr
fsrttnmgvtamtcggafrmlksgakfsspphhrlnskrswltsehvqslkqyqrlnksl
ipensrialrrkykielqnmvrswfamqdhtldsniliqhlnhdlsylgatkrfaydpam
tklftellkrelsnsinngeqhtngsflvlpnirvcgatalsspvtvgipsltaffgfvh
aferninrttssfrvesfaicvhqlhvekrgltaefvekgdgtisapatrddwqcdvvfs
lilntnfaqhidqdtlvtslpkrlargsakiaiddfkhinsfstletaieslpieagrwl
slyaqsnnnlsdllaamtedhqlmascvgyhlleepkdkpnslrgykhaiaeciiglins
itfssetdpntifwslknyqnylvvqprsindettdkssl

    Sequence, based on observed residues (ATOM records):
    >6lnbH (H:)
lkeliasnpddlttelkrafrpltphiaidgneldaltilvnltdkakckqklrdekwwa
scincvnyrqshnpkfpdirsegvirtqalgelpsfllssskippyhwsyshdskyvnks
afltnefcwdgeisclgellkdadhplwntlkklgcsqktckamakqladitlttinvtl
apnyltqislpdsdtsyislspvaslsmqshfhqrlqdenrhsaitrfsrttnmgvtamt
cggafrmlksgakfsspphhrlnngsflvlpnirvcgatalsspvtvgipsltaffgfvh
aferninrttssfrvesfaicvhqlhvekrgltaefvekgdgtisapatrddwqcdvvfs
lilntnfaqhidqdtlvtslpkrlargsakiaiddfkhinsfstletaieslpieagrwl
slyaqsnnnlsdllaamtedhqlmascvgyhlleepkdkpnslrgykhaiaeciiglins
itfssetdpntifwslknyqnylvvqprsi

  • Chain 'I':
    Sequence, based on SEQRES records:
    >6lnbI (I:)
mflqrpkpysdeslesffirvankngygdvhrfleatkrflqdidhngyqtfptditrin
pysaknsssartasflklaqltfneppellglainrtnmkyspstsavvrgaevfprsll
rthsipccplclrengyasylwhfqgyeychshnvplittcscgkefdyrvsglkgicck
ckepitltsrengheaactvsnwlagheskplpnlpksyrwglvhwwmgikdsefdhfsf
vqffsnwprsfhsiiedevefnlehavvstselrlkdllgrlffgsirlpernlqhniil
gellcylenrlwqdkglianlkmnaleatvmlncsldqiasmveqrilkpnrkskpnspl
dvtdylfhfgdifclwlaefqsdefnrsfyvsrw

    Sequence, based on observed residues (ATOM records):
    >6lnbI (I:)
mflqrpkpysdeslesffirvankngygdvhrfleatkrflqdidhngyqtfptditrin
pysaknsssartasflklaqltfneppellglainrtnmkyspstsavvrgaevfprsll
rthsipccplclrengyasylwhfqgyeychshnvplittcscgkefdyrvsglkgicck
ckepieaactvsnwlagheskplpnlpksyrwglvhwwmgikdsefdhfsfvqffsnwpr
sfhsiiedevefnlehavvstselrlkdllgrlffgsirlpernlqhniilgellcylen
rlwqdkglianlkmnaleatvmlncsldqiasmveqrilkpndvtdylfhfgdifclwla
efqsdefnrsfyvsrw

  • Chain 'J':
    Sequence, based on SEQRES records:
    >6lnbJ (J:)
mflqrpkpysdeslesffirvankngygdvhrfleatkrflqdidhngyqtfptditrin
pysaknsssartasflklaqltfneppellglainrtnmkyspstsavvrgaevfprsll
rthsipccplclrengyasylwhfqgyeychshnvplittcscgkefdyrvsglkgicck
ckepitltsrengheaactvsnwlagheskplpnlpksyrwglvhwwmgikdsefdhfsf
vqffsnwprsfhsiiedevefnlehavvstselrlkdllgrlffgsirlpernlqhniil
gellcylenrlwqdkglianlkmnaleatvmlncsldqiasmveqrilkpnrkskpnspl
dvtdylfhfgdifclwlaefqsdefnrsfyvsrw

    Sequence, based on observed residues (ATOM records):
    >6lnbJ (J:)
mflqrpkpysdeslesffirvankngygdvhrfleatkrflqdidhngyqtfptditrin
pysaknsssartasflklaqltfneppellglainrtnmkyspstsavvrgaevfprsll
rthsipccplclrengyasylwhfqgyeychshnvplittcscgkefdyrvseaactvsn
wlagheskplpnlpksyrwglvhwwmgikddhfsfvqffsnwprsfhsiiedevefnleh
avvstselrlkdllgrlffgsirlpernlqhniilgellcylenrlwqdkglianlkmna
leatvmlncsldqiasmveqrilkpndvtdylfhfgdifclwlaefqsdefnrsfyvsr

  • Chain 'M':
    No sequence available.

  • Chain 'N':
    No sequence available.

  • Chain 'O':
    No sequence available.