PDB entry 6lmt

View 6lmt on RCSB PDB site
Description: cryo-em structure of the killifish calhm1
Deposited on 2019-12-26, released 2020-07-29
The last revision was dated 2020-09-09, with a file datestamp of 2020-09-04.
Experiment type: EM
Resolution: 2.66 Å
R-factor: N/A
AEROSPACI score: 0.28 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Calcium homeostasis modulator 1
    Species: Oryzias latipes [TaxId:8090]
    Gene: CALHM1
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Calcium homeostasis modulator 1
    Species: Oryzias latipes [TaxId:8090]
    Gene: CALHM1
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Calcium homeostasis modulator 1
    Species: Oryzias latipes [TaxId:8090]
    Gene: CALHM1
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Calcium homeostasis modulator 1
    Species: Oryzias latipes [TaxId:8090]
    Gene: CALHM1
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Calcium homeostasis modulator 1
    Species: Oryzias latipes [TaxId:8090]
    Gene: CALHM1
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Calcium homeostasis modulator 1
    Species: Oryzias latipes [TaxId:8090]
    Gene: CALHM1
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: Calcium homeostasis modulator 1
    Species: Oryzias latipes [TaxId:8090]
    Gene: CALHM1
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: Calcium homeostasis modulator 1
    Species: Oryzias latipes [TaxId:8090]
    Gene: CALHM1
    Database cross-references and differences (RAF-indexed):
  • Heterogens: Y01

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6lmtA (A:)
    mdkfrmmfqflqsnqesfmngicgimalasaqmyssfefscpcmpeynytygiglliipp
    iwffllgfvlnnnvsvlaeewkrptgrrtkdpsvlrymlcsitqrsliapavwvsvtlmd
    gksflcafsinldiekfgnaslvigmteteklkflaripckdlfednevrvaatryikci
    sqacgwmfllmmtftaflirairpcftqaaflktkywshyidierkmfdetckehaksfa
    kvcihqyfenisgemqnfhrhqskdtsdaeeeekqrsdedkllgikaqedmnkvlenlyf
    q
    

    Sequence, based on observed residues (ATOM records):
    >6lmtA (A:)
    mfqflqsnqesfmngicgimalasaqmyssfefscpcmpeynytygiglliippiwffll
    gfvlnnnvsvlaeewkrptgrrtkdpsvlrymlcsitqrsliapavwvsvtlmdgksflc
    afsinldiekfgnaslvigmteteklkflaripckdlfednevrvaatryikcisqacgw
    mfllmmtftaflirairpcftqaaflktkywshyidierkmfdetckehaksfakvcihq
    yfenisgemqnfhr
    

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6lmtB (B:)
    mdkfrmmfqflqsnqesfmngicgimalasaqmyssfefscpcmpeynytygiglliipp
    iwffllgfvlnnnvsvlaeewkrptgrrtkdpsvlrymlcsitqrsliapavwvsvtlmd
    gksflcafsinldiekfgnaslvigmteteklkflaripckdlfednevrvaatryikci
    sqacgwmfllmmtftaflirairpcftqaaflktkywshyidierkmfdetckehaksfa
    kvcihqyfenisgemqnfhrhqskdtsdaeeeekqrsdedkllgikaqedmnkvlenlyf
    q
    

    Sequence, based on observed residues (ATOM records):
    >6lmtB (B:)
    mfqflqsnqesfmngicgimalasaqmyssfefscpcmpeynytygiglliippiwffll
    gfvlnnnvsvlaeewkrptgrrtkdpsvlrymlcsitqrsliapavwvsvtlmdgksflc
    afsinldiekfgnaslvigmteteklkflaripckdlfednevrvaatryikcisqacgw
    mfllmmtftaflirairpcftqaaflktkywshyidierkmfdetckehaksfakvcihq
    yfenisgemqnfhr
    

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6lmtC (C:)
    mdkfrmmfqflqsnqesfmngicgimalasaqmyssfefscpcmpeynytygiglliipp
    iwffllgfvlnnnvsvlaeewkrptgrrtkdpsvlrymlcsitqrsliapavwvsvtlmd
    gksflcafsinldiekfgnaslvigmteteklkflaripckdlfednevrvaatryikci
    sqacgwmfllmmtftaflirairpcftqaaflktkywshyidierkmfdetckehaksfa
    kvcihqyfenisgemqnfhrhqskdtsdaeeeekqrsdedkllgikaqedmnkvlenlyf
    q
    

    Sequence, based on observed residues (ATOM records):
    >6lmtC (C:)
    mfqflqsnqesfmngicgimalasaqmyssfefscpcmpeynytygiglliippiwffll
    gfvlnnnvsvlaeewkrptgrrtkdpsvlrymlcsitqrsliapavwvsvtlmdgksflc
    afsinldiekfgnaslvigmteteklkflaripckdlfednevrvaatryikcisqacgw
    mfllmmtftaflirairpcftqaaflktkywshyidierkmfdetckehaksfakvcihq
    yfenisgemqnfhr
    

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6lmtD (D:)
    mdkfrmmfqflqsnqesfmngicgimalasaqmyssfefscpcmpeynytygiglliipp
    iwffllgfvlnnnvsvlaeewkrptgrrtkdpsvlrymlcsitqrsliapavwvsvtlmd
    gksflcafsinldiekfgnaslvigmteteklkflaripckdlfednevrvaatryikci
    sqacgwmfllmmtftaflirairpcftqaaflktkywshyidierkmfdetckehaksfa
    kvcihqyfenisgemqnfhrhqskdtsdaeeeekqrsdedkllgikaqedmnkvlenlyf
    q
    

    Sequence, based on observed residues (ATOM records):
    >6lmtD (D:)
    mfqflqsnqesfmngicgimalasaqmyssfefscpcmpeynytygiglliippiwffll
    gfvlnnnvsvlaeewkrptgrrtkdpsvlrymlcsitqrsliapavwvsvtlmdgksflc
    afsinldiekfgnaslvigmteteklkflaripckdlfednevrvaatryikcisqacgw
    mfllmmtftaflirairpcftqaaflktkywshyidierkmfdetckehaksfakvcihq
    yfenisgemqnfhr
    

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6lmtE (E:)
    mdkfrmmfqflqsnqesfmngicgimalasaqmyssfefscpcmpeynytygiglliipp
    iwffllgfvlnnnvsvlaeewkrptgrrtkdpsvlrymlcsitqrsliapavwvsvtlmd
    gksflcafsinldiekfgnaslvigmteteklkflaripckdlfednevrvaatryikci
    sqacgwmfllmmtftaflirairpcftqaaflktkywshyidierkmfdetckehaksfa
    kvcihqyfenisgemqnfhrhqskdtsdaeeeekqrsdedkllgikaqedmnkvlenlyf
    q
    

    Sequence, based on observed residues (ATOM records):
    >6lmtE (E:)
    mfqflqsnqesfmngicgimalasaqmyssfefscpcmpeynytygiglliippiwffll
    gfvlnnnvsvlaeewkrptgrrtkdpsvlrymlcsitqrsliapavwvsvtlmdgksflc
    afsinldiekfgnaslvigmteteklkflaripckdlfednevrvaatryikcisqacgw
    mfllmmtftaflirairpcftqaaflktkywshyidierkmfdetckehaksfakvcihq
    yfenisgemqnfhr
    

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6lmtF (F:)
    mdkfrmmfqflqsnqesfmngicgimalasaqmyssfefscpcmpeynytygiglliipp
    iwffllgfvlnnnvsvlaeewkrptgrrtkdpsvlrymlcsitqrsliapavwvsvtlmd
    gksflcafsinldiekfgnaslvigmteteklkflaripckdlfednevrvaatryikci
    sqacgwmfllmmtftaflirairpcftqaaflktkywshyidierkmfdetckehaksfa
    kvcihqyfenisgemqnfhrhqskdtsdaeeeekqrsdedkllgikaqedmnkvlenlyf
    q
    

    Sequence, based on observed residues (ATOM records):
    >6lmtF (F:)
    mfqflqsnqesfmngicgimalasaqmyssfefscpcmpeynytygiglliippiwffll
    gfvlnnnvsvlaeewkrptgrrtkdpsvlrymlcsitqrsliapavwvsvtlmdgksflc
    afsinldiekfgnaslvigmteteklkflaripckdlfednevrvaatryikcisqacgw
    mfllmmtftaflirairpcftqaaflktkywshyidierkmfdetckehaksfakvcihq
    yfenisgemqnfhr
    

  • Chain 'G':
    Sequence, based on SEQRES records:
    >6lmtG (G:)
    mdkfrmmfqflqsnqesfmngicgimalasaqmyssfefscpcmpeynytygiglliipp
    iwffllgfvlnnnvsvlaeewkrptgrrtkdpsvlrymlcsitqrsliapavwvsvtlmd
    gksflcafsinldiekfgnaslvigmteteklkflaripckdlfednevrvaatryikci
    sqacgwmfllmmtftaflirairpcftqaaflktkywshyidierkmfdetckehaksfa
    kvcihqyfenisgemqnfhrhqskdtsdaeeeekqrsdedkllgikaqedmnkvlenlyf
    q
    

    Sequence, based on observed residues (ATOM records):
    >6lmtG (G:)
    mfqflqsnqesfmngicgimalasaqmyssfefscpcmpeynytygiglliippiwffll
    gfvlnnnvsvlaeewkrptgrrtkdpsvlrymlcsitqrsliapavwvsvtlmdgksflc
    afsinldiekfgnaslvigmteteklkflaripckdlfednevrvaatryikcisqacgw
    mfllmmtftaflirairpcftqaaflktkywshyidierkmfdetckehaksfakvcihq
    yfenisgemqnfhr
    

  • Chain 'H':
    Sequence, based on SEQRES records:
    >6lmtH (H:)
    mdkfrmmfqflqsnqesfmngicgimalasaqmyssfefscpcmpeynytygiglliipp
    iwffllgfvlnnnvsvlaeewkrptgrrtkdpsvlrymlcsitqrsliapavwvsvtlmd
    gksflcafsinldiekfgnaslvigmteteklkflaripckdlfednevrvaatryikci
    sqacgwmfllmmtftaflirairpcftqaaflktkywshyidierkmfdetckehaksfa
    kvcihqyfenisgemqnfhrhqskdtsdaeeeekqrsdedkllgikaqedmnkvlenlyf
    q
    

    Sequence, based on observed residues (ATOM records):
    >6lmtH (H:)
    mfqflqsnqesfmngicgimalasaqmyssfefscpcmpeynytygiglliippiwffll
    gfvlnnnvsvlaeewkrptgrrtkdpsvlrymlcsitqrsliapavwvsvtlmdgksflc
    afsinldiekfgnaslvigmteteklkflaripckdlfednevrvaatryikcisqacgw
    mfllmmtftaflirairpcftqaaflktkywshyidierkmfdetckehaksfakvcihq
    yfenisgemqnfhr