PDB entry 6ll9

View 6ll9 on RCSB PDB site
Description: Crystal structure of D-alanine-D-alanine ligase from Aeromonas hydrophila
Class: ligase
Keywords: Aeromonas hydrophila, D-alanine-D-alanine ligase, cell wall, LIGASE
Deposited on 2019-12-22, released 2020-07-15
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-07-24.
Experiment type: XRAY
Resolution: 2.7 Å
R-factor: N/A
AEROSPACI score: 0.24 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: d-alanine--d-alanine ligase
    Species: Aeromonas hydrophila [TaxId:644]
    Gene: ddl
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6ll9a1, d6ll9a2
  • Chain 'B':
    Compound: d-alanine--d-alanine ligase
    Species: Aeromonas hydrophila [TaxId:644]
    Gene: ddl
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6ll9b1
  • Heterogens: DAL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6ll9A (A:)
mgsshhhhhhssglvprgshmasmtggqqmgrgsefelrrqacgrmknihvlllcggggs
ehevslrsanfleqqlgllpgvdvtrvemfadrwlsadgrecklgldkllsfdsvarpvd
yvvpcihgypgetgdlqsflelaglpylgcdaeaskicfnkistklwlsaigipntpylf
lteqndaalseakaalakwgkvfikaasqgssvgcysasneadlvkgiadafgyseqvli
ekavkprelevavyqygdelvatypgeicvpqgkfytyeekyssashtetalraegltqa
qadaiheyalkafrqlklthlsridfflteegeillneintfpgmtsismfpkllehhgh
rfvdyleqilrkav

    Sequence, based on observed residues (ATOM records): (download) 
    >6ll9A (A:)
ihvlllcggggsehevslrsanfleqqlgllpgvdvtrvemfadrwlsadgrecklgldk
llsfdsvarpvdyvvpcihgypgetgdlqsflelaglpylgcdaeaskicfnkistklwl
saigipntpylflteqndaalseakaalakwgkvfikaasqgcysasneadlvkgiadaf
gyseqvliekaprelevavyqygdelvatypgeictalraegltqaqadaiheyalkafr
qlklthlsridfflteegeillneintfpgmtsismfpkllehhghrfvdyleqilr

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6ll9B (B:)
mgsshhhhhhssglvprgshmasmtggqqmgrgsefelrrqacgrmknihvlllcggggs
ehevslrsanfleqqlgllpgvdvtrvemfadrwlsadgrecklgldkllsfdsvarpvd
yvvpcihgypgetgdlqsflelaglpylgcdaeaskicfnkistklwlsaigipntpylf
lteqndaalseakaalakwgkvfikaasqgssvgcysasneadlvkgiadafgyseqvli
ekavkprelevavyqygdelvatypgeicvpqgkfytyeekyssashtetalraegltqa
qadaiheyalkafrqlklthlsridfflteegeillneintfpgmtsismfpkllehhgh
rfvdyleqilrkav

    Sequence, based on observed residues (ATOM records): (download) 
    >6ll9B (B:)
nihvlllcggggsehevslrsanfleqqlgllpgvdvtrvemfadrwlsadgrecklgld
kllsfdsvarpvdyvvpcihgypgetgdlqsflelaglpylgcdaeaskicfnkistklw
lsaigipntpylflteqndaalseakaalvkgiadafkavprelevavyqygdelvatyp
geicalraegltqaqadaiheyalkafrqlklthlsridfflteegeillneintfpgmt
sismfpkllehhghrfvdyleqilrk