PDB entry 6lht

View 6lht on RCSB PDB site
Description: localized reconstruction of coxsackievirus a16 mature virion in complex with fab 18a7
Deposited on 2019-12-10, released 2020-02-05
The last revision was dated 2020-02-26, with a file datestamp of 2020-02-21.
Experiment type: EM
Resolution: 3.67 Å
R-factor: N/A
AEROSPACI score: 0.06 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: vp1 protein
    Species: Coxsackievirus A16 [TaxId:31704]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: vp1 protein
    Species: Coxsackievirus A16 [TaxId:31704]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: vp1 protein
    Species: Coxsackievirus A16 [TaxId:31704]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: vp1 protein
    Species: Coxsackievirus A16 [TaxId:31704]
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: vp1 protein
    Species: Coxsackievirus A16 [TaxId:31704]
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: heavy chain variable region of Fab 18A7
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6LHT (0-119)
  • Chain 'L':
    Compound: light chain variable region of Fab 18A7
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6LHT (0-112)
  • Heterogens: SPH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6lhtA (A:)
gdpiadmidqtvnnqvnrsltalqvlptaanteasshrlgtgvvpalqaaetgassnasd
knlietrcvlnhhstqetaignffsraglvsiitmpttdtqntdgyvnwdidlmgyaqlr
rkcelftymrfdaeftfvvakpngvlvpqllqymyvppgapkptsrdsfawqtatnpsvf
vkmtdppaqvsvpfmspasayqwfydgyptfgehlqandldygqcpnnmmgtfsirtvgt
eksphsitlrvymrikhvrawiprplrnqpylfktnpnykgndikctstsrdkittl

    Sequence, based on observed residues (ATOM records):
    >6lhtA (A:)
nhhstqetaignffsraglvsiitmpdgyvnwdidlmgyaqlrrkcelftymrfdaeftf
vvakpngvlvpqllqymyvppgapkptsrdsfawqtatnpsvfvkmtdppaqvsvpfmsp
asayqwfydgyptfgehlqandldygqcpnnmmgtfsirtvgteksphsitlrvymrikh
vrawiprplrnqpylfktnpnykgndikctstsrdkit

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6lhtB (B:)
gdpiadmidqtvnnqvnrsltalqvlptaanteasshrlgtgvvpalqaaetgassnasd
knlietrcvlnhhstqetaignffsraglvsiitmpttdtqntdgyvnwdidlmgyaqlr
rkcelftymrfdaeftfvvakpngvlvpqllqymyvppgapkptsrdsfawqtatnpsvf
vkmtdppaqvsvpfmspasayqwfydgyptfgehlqandldygqcpnnmmgtfsirtvgt
eksphsitlrvymrikhvrawiprplrnqpylfktnpnykgndikctstsrdkittl

    Sequence, based on observed residues (ATOM records):
    >6lhtB (B:)
nhhstqetaignffsraglvsiitmpdgyvnwdidlmgyaqlrrkcelftymrfdaeftf
vvakpngvlvpqllqymyvppgapkptsrdsfawqtatnpsvfvkmtdppaqvsvpfmsp
asayqwfydgyptfgehlqandldygqcpnnmmgtfsirtvgteksphsitlrvymrikh
vrawiprplrnqpylfktnpnykgndikctstsrdkittl

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6lhtC (C:)
gdpiadmidqtvnnqvnrsltalqvlptaanteasshrlgtgvvpalqaaetgassnasd
knlietrcvlnhhstqetaignffsraglvsiitmpttdtqntdgyvnwdidlmgyaqlr
rkcelftymrfdaeftfvvakpngvlvpqllqymyvppgapkptsrdsfawqtatnpsvf
vkmtdppaqvsvpfmspasayqwfydgyptfgehlqandldygqcpnnmmgtfsirtvgt
eksphsitlrvymrikhvrawiprplrnqpylfktnpnykgndikctstsrdkittl

    Sequence, based on observed residues (ATOM records):
    >6lhtC (C:)
nhhstqetaignffsraglvsiitmpdgyvnwdidlmgyaqlrrkcelftymrfdaeftf
vvakpngvlvpqllqymyvppgapkptsrdsfawqtatnpsvfvkmtdppaqvsvpfmsp
asayqwfydgyptfgehlqandldygqcpnnmmgtfsirtvgteksphsitlrvymrikh
vrawiprplrnqpylfktnpnykgndikctstsrdkit

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6lhtD (D:)
gdpiadmidqtvnnqvnrsltalqvlptaanteasshrlgtgvvpalqaaetgassnasd
knlietrcvlnhhstqetaignffsraglvsiitmpttdtqntdgyvnwdidlmgyaqlr
rkcelftymrfdaeftfvvakpngvlvpqllqymyvppgapkptsrdsfawqtatnpsvf
vkmtdppaqvsvpfmspasayqwfydgyptfgehlqandldygqcpnnmmgtfsirtvgt
eksphsitlrvymrikhvrawiprplrnqpylfktnpnykgndikctstsrdkittl

    Sequence, based on observed residues (ATOM records):
    >6lhtD (D:)
nhhstqetaignffsraglvsiitmpdgyvnwdidlmgyaqlrrkcelftymrfdaeftf
vvakpngvlvpqllqymyvppgapkptsrdsfawqtatnpsvfvkmtdppaqvsvpfmsp
asayqwfydgyptfgehlqandldygqcpnnmmgtfsirtvgteksphsitlrvymrikh
vrawiprplrnqpylfktnpnykgndikctstsrdkittl

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6lhtE (E:)
gdpiadmidqtvnnqvnrsltalqvlptaanteasshrlgtgvvpalqaaetgassnasd
knlietrcvlnhhstqetaignffsraglvsiitmpttdtqntdgyvnwdidlmgyaqlr
rkcelftymrfdaeftfvvakpngvlvpqllqymyvppgapkptsrdsfawqtatnpsvf
vkmtdppaqvsvpfmspasayqwfydgyptfgehlqandldygqcpnnmmgtfsirtvgt
eksphsitlrvymrikhvrawiprplrnqpylfktnpnykgndikctstsrdkittl

    Sequence, based on observed residues (ATOM records):
    >6lhtE (E:)
nhhstqetaignffsraglvsiitmpdgyvnwdidlmgyaqlrrkcelftymrfdaeftf
vvakpngvlvpqllqymyvppgapkptsrdsfawqtatnpsvfvkmtdppaqvsvpfmsp
asayqwfydgyptfgehlqandldygqcpnnmmgtfsirtvgteksphsitlrvymrikh
vrawiprplrnqpylfktnpnykgndikctstsrdkittl

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records:
    >6lhtH (H:)
evqlqqsgpelvkpgasvkmsckasgytftdyymkwvkqshgkslewigdinpyngdsfn
nqkfkgkatltvdtssstaymqlnsltsedsavyycaipydydegwfaywgqgtlvtvsa

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records:
    >6lhtL (L:)
divmsqspsslavsvgekvtmsckssqsllysnnqknylawyqqkpgqspqlliywastr
esgvpdrftgsesgtdftltissvkaedlavfycqqyynypwtfgggtkleik