PDB entry 6lhq
View 6lhq on RCSB PDB site
Description: The cryo-EM structure of coxsackievirus A16 mature virion in complex with Fab NA9D7
Class: virus
Keywords: Virus
Deposited on
2019-12-09, released
2020-02-05
The last revision prior to the SCOPe 2.08 freeze date was dated
2020-02-26, with a file datestamp of
2020-02-21.
Experiment type: EM
Resolution: 3.06 Å
R-factor: N/A
AEROSPACI score: 0.12
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: vp1 protein
Species: Coxsackievirus A16 [TaxId:31704]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d6lhqa_ - Chain 'B':
Compound: vp2 protein
Species: Coxsackievirus A16 [TaxId:31704]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d6lhqb_ - Chain 'C':
Compound: vp3 protein
Species: Coxsackievirus A16 [TaxId:31704]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d6lhqc_ - Chain 'D':
Compound: VP4 protein
Species: Coxsackievirus A16 [TaxId:31704]
Database cross-references and differences (RAF-indexed):
- Chain 'H':
Compound: heavy chain variable region of Fab NA9D7
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d6lhqh_ - Chain 'L':
Compound: light chain variable region of Fab NA9D7
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d6lhql_ - Heterogens: SPH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>6lhqA (A:)
gdpiadmidqtvnnqvnrsltalqvlptaanteasshrlgtgvvpalqaaetgassnasd
knlietrcvlnhhstqetaignffsraglvsiitmpttdtqntdgyvnwdidlmgyaqlr
rkcelftymrfdaeftfvvakpngvlvpqllqymyvppgapkptsrdsfawqtatnpsvf
vkmtdppaqvsvpfmspasayqwfydgyptfgehlqandldygqcpnnmmgtfsirtvgt
eksphsitlrvymrikhvrawiprplrnqpylfktnpnykgndikctstsrdkittl
Sequence, based on observed residues (ATOM records): (download)
>6lhqA (A:)
dpiadmidrsltalqvlptaanteasshrlgtgvvpalqaaetgassnasdknlietrcv
lnhhstqetaignffsraglvsiitmpntdgyvnwdidlmgyaqlrrkcelftymrfdae
ftfvvakpngvlvpqllqymyvppgapkptsrdsfawqtatnpsvfvkmtdppaqvsvpf
mspasayqwfydgyptfgehlqandldygqcpnnmmgtfsirtvgteksphsitlrvymr
ikhvrawiprplrnqpylfktnpnykgndikctstsrdkittl
- Chain 'B':
Sequence, based on SEQRES records: (download)
>6lhqB (B:)
spsaeacgysdrvaqltignstittqeaaniviaygewpeycpdtdatavdkptrpdvsv
nrfftldtkswakdskgwywkfpdvltevgvfgqnaqfhylyrsgfcvhvqcnaskfhqg
allvavlpeyvlgtiaggtgnenshppyattqpgqvgavlthpyvldagiplsqltvcph
qwinlrtnncatiivpymntvpfdsalnhcnfgllvipvvpldfnagatseipitvtiap
mcaefaglrqavkq
Sequence, based on observed residues (ATOM records): (download)
>6lhqB (B:)
sdrvaqltignstittqeaaniviaygewpeycpdtdatavdkptrpdvsvnrfftldtk
swakdskgwywkfpdvltevgvfgqnaqfhylyrsgfcvhvqcnaskfhqgallvavlpe
yvlgtiaggtgnenshppyattqpgqvgavlthpyvldagiplsqltvcphqwinlrtnn
catiivpymntvpfdsalnhcnfgllvipvvpldfnagatseipitvtiapmcaefaglr
qavkq
- Chain 'C':
Sequence; same for both SEQRES and ATOM records: (download)
>6lhqC (C:)
giptelkpgtnqflttddgvsapilpgfhptppihipgevhnlleicrvetilevnnlkt
nettpmqrlcfpvsvqsktgelcaafradpgrdgpwqstilgqlcryytqwsgslevtfm
fagsfmatgkmliaytppggnvpadritamlgthviwdfglqssvtlvvpwisnthyrah
aragyfdyyttgiitiwyqtnyvvpigapttayivalaaaqdnftmklckdtedieqtan
iq
- Chain 'D':
No sequence available.
- Chain 'H':
Sequence; same for both SEQRES and ATOM records: (download)
>6lhqH (H:)
evqlqqsgpelvkpgasvkmsckasgytftdyymkwvkqshgkslewigdinpnngatsy
nqkfkgkatltvdkssstaymqlnsltsedsavyycarrgyglyyamdywgqgtsvtvss
- Chain 'L':
Sequence; same for both SEQRES and ATOM records: (download)
>6lhqL (L:)
eivltqspttmaaspgekititcsasssissnylhwyqqkpgfspklliyrtsnlasgvp
arfsgsgsgtsysltigtmeaedvatyycqqgssiphtfgggtkleik