PDB entry 6lhq

View 6lhq on RCSB PDB site
Description: The cryo-EM structure of coxsackievirus A16 mature virion in complex with Fab NA9D7
Class: virus
Keywords: Virus
Deposited on 2019-12-09, released 2020-02-05
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-02-26, with a file datestamp of 2020-02-21.
Experiment type: EM
Resolution: 3.06 Å
R-factor: N/A
AEROSPACI score: 0.12 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: vp1 protein
    Species: Coxsackievirus A16 [TaxId:31704]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6lhqa_
  • Chain 'B':
    Compound: vp2 protein
    Species: Coxsackievirus A16 [TaxId:31704]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6lhqb_
  • Chain 'C':
    Compound: vp3 protein
    Species: Coxsackievirus A16 [TaxId:31704]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6lhqc_
  • Chain 'D':
    Compound: VP4 protein
    Species: Coxsackievirus A16 [TaxId:31704]
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: heavy chain variable region of Fab NA9D7
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6LHQ (0-119)
    Domains in SCOPe 2.08: d6lhqh_
  • Chain 'L':
    Compound: light chain variable region of Fab NA9D7
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6LHQ (0-107)
    Domains in SCOPe 2.08: d6lhql_
  • Heterogens: SPH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >6lhqA (A:)
    gdpiadmidqtvnnqvnrsltalqvlptaanteasshrlgtgvvpalqaaetgassnasd
    knlietrcvlnhhstqetaignffsraglvsiitmpttdtqntdgyvnwdidlmgyaqlr
    rkcelftymrfdaeftfvvakpngvlvpqllqymyvppgapkptsrdsfawqtatnpsvf
    vkmtdppaqvsvpfmspasayqwfydgyptfgehlqandldygqcpnnmmgtfsirtvgt
    eksphsitlrvymrikhvrawiprplrnqpylfktnpnykgndikctstsrdkittl
    

    Sequence, based on observed residues (ATOM records): (download)
    >6lhqA (A:)
    dpiadmidrsltalqvlptaanteasshrlgtgvvpalqaaetgassnasdknlietrcv
    lnhhstqetaignffsraglvsiitmpntdgyvnwdidlmgyaqlrrkcelftymrfdae
    ftfvvakpngvlvpqllqymyvppgapkptsrdsfawqtatnpsvfvkmtdppaqvsvpf
    mspasayqwfydgyptfgehlqandldygqcpnnmmgtfsirtvgteksphsitlrvymr
    ikhvrawiprplrnqpylfktnpnykgndikctstsrdkittl
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >6lhqB (B:)
    spsaeacgysdrvaqltignstittqeaaniviaygewpeycpdtdatavdkptrpdvsv
    nrfftldtkswakdskgwywkfpdvltevgvfgqnaqfhylyrsgfcvhvqcnaskfhqg
    allvavlpeyvlgtiaggtgnenshppyattqpgqvgavlthpyvldagiplsqltvcph
    qwinlrtnncatiivpymntvpfdsalnhcnfgllvipvvpldfnagatseipitvtiap
    mcaefaglrqavkq
    

    Sequence, based on observed residues (ATOM records): (download)
    >6lhqB (B:)
    sdrvaqltignstittqeaaniviaygewpeycpdtdatavdkptrpdvsvnrfftldtk
    swakdskgwywkfpdvltevgvfgqnaqfhylyrsgfcvhvqcnaskfhqgallvavlpe
    yvlgtiaggtgnenshppyattqpgqvgavlthpyvldagiplsqltvcphqwinlrtnn
    catiivpymntvpfdsalnhcnfgllvipvvpldfnagatseipitvtiapmcaefaglr
    qavkq
    

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download)
    >6lhqC (C:)
    giptelkpgtnqflttddgvsapilpgfhptppihipgevhnlleicrvetilevnnlkt
    nettpmqrlcfpvsvqsktgelcaafradpgrdgpwqstilgqlcryytqwsgslevtfm
    fagsfmatgkmliaytppggnvpadritamlgthviwdfglqssvtlvvpwisnthyrah
    aragyfdyyttgiitiwyqtnyvvpigapttayivalaaaqdnftmklckdtedieqtan
    iq
    

  • Chain 'D':
    No sequence available.

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records: (download)
    >6lhqH (H:)
    evqlqqsgpelvkpgasvkmsckasgytftdyymkwvkqshgkslewigdinpnngatsy
    nqkfkgkatltvdkssstaymqlnsltsedsavyycarrgyglyyamdywgqgtsvtvss
    

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records: (download)
    >6lhqL (L:)
    eivltqspttmaaspgekititcsasssissnylhwyqqkpgfspklliyrtsnlasgvp
    arfsgsgsgtsysltigtmeaedvatyycqqgssiphtfgggtkleik