PDB entry 6lhg

View 6lhg on RCSB PDB site
Description: Crystal structure of chicken cCD8aa/pBF2*04:01
Class: immune system
Keywords: chicken, complex, BF2*04:01, IMMUNE SYSTEM
Deposited on 2019-12-08, released 2020-12-09
The last revision prior to the SCOPe 2.07 freeze date was dated 2020-12-09, with a file datestamp of 2020-12-04.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: N/A
AEROSPACI score: 0.23 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: MHC class I alpha chain 2
    Species: Gallus gallus [TaxId:9031]
    Gene: B-FIV, BF2
    Database cross-references and differences (RAF-indexed):
    • Uniprot O46790 (0-269)
      • engineered mutation (243)
      • expression tag (270-271)
    Domains in SCOPe 2.07: d6lhga1, d6lhga2, d6lhga3
  • Chain 'B':
    Compound: Beta-2-microglobulin
    Species: Gallus gallus [TaxId:9031]
    Gene: B2M
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6lhgb_
  • Chain 'C':
    Compound: IE8 peptide
    Species: Gallus gallus [TaxId:9031]
    Database cross-references and differences (RAF-indexed):
    • PDB 6LHG (0-7)
  • Chain 'D':
    Compound: MHC class I alpha chain 2
    Species: Gallus gallus [TaxId:9031]
    Gene: B-FIV, BF2
    Database cross-references and differences (RAF-indexed):
    • Uniprot O46790 (0-269)
      • engineered mutation (243)
      • expression tag (270-271)
    Domains in SCOPe 2.07: d6lhgd1, d6lhgd2, d6lhgd3
  • Chain 'E':
    Compound: Beta-2-microglobulin
    Species: Gallus gallus [TaxId:9031]
    Gene: B2M
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6lhge_
  • Chain 'F':
    Compound: IE8 peptide
    Species: Gallus gallus [TaxId:9031]
    Database cross-references and differences (RAF-indexed):
    • PDB 6LHG (0-7)
  • Chain 'G':
    Compound: CD8 alpha chain
    Species: Gallus gallus [TaxId:9031]
    Gene: CD8
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6lhgg_
  • Chain 'H':
    Compound: CD8 alpha chain
    Species: Gallus gallus [TaxId:9031]
    Gene: CD8
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6lhgh_
  • Chain 'I':
    Compound: CD8 alpha chain
    Species: Gallus gallus [TaxId:9031]
    Gene: CD8
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6lhgi_
  • Chain 'J':
    Compound: CD8 alpha chain
    Species: Gallus gallus [TaxId:9031]
    Gene: CD8
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6lhgj_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6lhgA (A:)
elhtlryirtamtdpgpgqpwfvtvgyvdgelfvhynstarryvprtewiaantdqqywd
gqtqigqlneqinrenlgirqrrynqtggshtvqwmfgcdiledgtirgyrqsaydgrdf
ialdkdmktftaavpeavptkrkweeeseperwknyleetcvewlrryveygkaelgrre
rpevrvwgkeadgiltlscrahgfyprpivvswlkdgavrgqdahsggivpngdgtyhtw
vtieaqpgdgdkyqcrvehaslpqpglyswkl

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6lhgB (B:)
dltpkvqvysrfpasagtknvlncfaagfhppkisitlmkdgvpmegaqysdmsfnddwt
fqrlvhadftpssgstyackvehetlkepqvykwdpe

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6lhgD (D:)
elhtlryirtamtdpgpgqpwfvtvgyvdgelfvhynstarryvprtewiaantdqqywd
gqtqigqlneqinrenlgirqrrynqtggshtvqwmfgcdiledgtirgyrqsaydgrdf
ialdkdmktftaavpeavptkrkweeeseperwknyleetcvewlrryveygkaelgrre
rpevrvwgkeadgiltlscrahgfyprpivvswlkdgavrgqdahsggivpngdgtyhtw
vtieaqpgdgdkyqcrvehaslpqpglyswkl

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6lhgE (E:)
dltpkvqvysrfpasagtknvlncfaagfhppkisitlmkdgvpmegaqysdmsfnddwt
fqrlvhadftpssgstyackvehetlkepqvykwdpe

  • Chain 'F':
    No sequence available.

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >6lhgG (G:)
qgqrntmearflnrnmkhpqegqplelecmpfnidngvswirqdkdgklhfivyisplsr
tafprnertssqfegskqgssfrlvvknfraqdqgtyfcianinqmlyfssgqpaff

    Sequence, based on observed residues (ATOM records): (download) 
    >6lhgG (G:)
tmearflnrnmkhpqegqplelecmpfnidngvswirqdkdgklhfivyisplsrtafpr
nertssqfegskqgssfrlvvknfraqdqgtyfcianinqmlyfssgqpaff

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >6lhgH (H:)
qgqrntmearflnrnmkhpqegqplelecmpfnidngvswirqdkdgklhfivyisplsr
tafprnertssqfegskqgssfrlvvknfraqdqgtyfcianinqmlyfssgqpaff

    Sequence, based on observed residues (ATOM records): (download) 
    >6lhgH (H:)
tmearflnrnmkhpqegqplelecmpfnidngvswirqdkdgklhfivyisplsrtafpr
nertssqfegskqgssfrlvvknfraqdqgtyfcianinqmlyfssgqpaff

  • Chain 'I':
    Sequence, based on SEQRES records: (download) 
    >6lhgI (I:)
qgqrntmearflnrnmkhpqegqplelecmpfnidngvswirqdkdgklhfivyisplsr
tafprnertssqfegskqgssfrlvvknfraqdqgtyfcianinqmlyfssgqpaff

    Sequence, based on observed residues (ATOM records): (download) 
    >6lhgI (I:)
tmearflnrnmkhpqegqplelecmpfnidngvswirqdkdgklhfivyisplsrtafpr
nertssqfegskqgssfrlvvknfraqdqgtyfcianinqmlyfssgqpaff

  • Chain 'J':
    Sequence, based on SEQRES records: (download) 
    >6lhgJ (J:)
qgqrntmearflnrnmkhpqegqplelecmpfnidngvswirqdkdgklhfivyisplsr
tafprnertssqfegskqgssfrlvvknfraqdqgtyfcianinqmlyfssgqpaff

    Sequence, based on observed residues (ATOM records): (download) 
    >6lhgJ (J:)
tmearflnrnmkhpqegqplelecmpfnidngvswirqdkdgklhfivyisplsrtafpr
nertssqfegskqgssfrlvvknfraqdqgtyfcianinqmlyfssgqpaff