PDB entry 6lfd

View 6lfd on RCSB PDB site
Description: Crystal structure of VMB-1 at pH5.5(Bis-Tris)
Class: hydrolase
Keywords: metallo-beta-lactamase, subclasse B1, HYDROLASE
Deposited on 2019-12-02, released 2020-02-26
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-03-18, with a file datestamp of 2020-03-13.
Experiment type: XRAY
Resolution: 1.92 Å
R-factor: N/A
AEROSPACI score: 0.33 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: vmb-1
    Species: Vibrio alginolyticus [TaxId:663]
    Gene: vmb-1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6lfda_
  • Chain 'B':
    Compound: vmb-1
    Species: Vibrio alginolyticus [TaxId:663]
    Gene: vmb-1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6lfdb_
  • Chain 'C':
    Compound: vmb-1
    Species: Vibrio alginolyticus [TaxId:663]
    Gene: vmb-1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6lfdc_
  • Chain 'D':
    Compound: vmb-1
    Species: Vibrio alginolyticus [TaxId:663]
    Gene: vmb-1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6lfdd_
  • Heterogens: GOL, ZN, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >6lfdA (A:)
    gshmnnegtkelklkklsdnvyqhisykrvepwgligasglvvingteahmidtpwttqg
    tkqliewieakgltiksavvthfhedasgdipllndlkiktyatsltnkllklnqkevss
    deissntfefidgvasvfypgaghtednivvwlpnekilfggcfvkslknknlgytgdan
    isewpnsmqkvinrypdaklvvpghgevgdvsllkhtqalalsaaasnkkinkd
    

    Sequence, based on observed residues (ATOM records): (download)
    >6lfdA (A:)
    gtkelklkklsdnvyqhisykrvepwgligasglvvingteahmidtpwttqgtkqliew
    ieakgltiksavvthfhedasgdipllndlkiktyatsltnkllklnqkevssdeissnt
    fefidgvasvfypgaghtednivvwlpnekilfggcfvkslknknlgytgdanisewpns
    mqkvinrypdaklvvpghgevgdvsllkhtqalalsaaa
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >6lfdB (B:)
    gshmnnegtkelklkklsdnvyqhisykrvepwgligasglvvingteahmidtpwttqg
    tkqliewieakgltiksavvthfhedasgdipllndlkiktyatsltnkllklnqkevss
    deissntfefidgvasvfypgaghtednivvwlpnekilfggcfvkslknknlgytgdan
    isewpnsmqkvinrypdaklvvpghgevgdvsllkhtqalalsaaasnkkinkd
    

    Sequence, based on observed residues (ATOM records): (download)
    >6lfdB (B:)
    gtkelklkklsdnvyqhisykrvepwgligasglvvingteahmidtpwttqgtkqliew
    ieakgltiksavvthfhedasgdipllndlkiktyatsltnkllklnqkevssdeissnt
    fefidgvasvfypgaghtednivvwlpnekilfggcfvkslknknlgytgdanisewpns
    mqkvinrypdaklvvpghgevgdvsllkhtqalalsaaas
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >6lfdC (C:)
    gshmnnegtkelklkklsdnvyqhisykrvepwgligasglvvingteahmidtpwttqg
    tkqliewieakgltiksavvthfhedasgdipllndlkiktyatsltnkllklnqkevss
    deissntfefidgvasvfypgaghtednivvwlpnekilfggcfvkslknknlgytgdan
    isewpnsmqkvinrypdaklvvpghgevgdvsllkhtqalalsaaasnkkinkd
    

    Sequence, based on observed residues (ATOM records): (download)
    >6lfdC (C:)
    gtkelklkklsdnvyqhisykrvepwgligasglvvingteahmidtpwttqgtkqliew
    ieakgltiksavvthfhedasgdipllndlkiktyatsltnkllklnqkevssdeissnt
    fefidgvasvfypgaghtednivvwlpnekilfggcfvkslknknlgytgdanisewpns
    mqkvinrypdaklvvpghgevgdvsllkhtqalalsaaa
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >6lfdD (D:)
    gshmnnegtkelklkklsdnvyqhisykrvepwgligasglvvingteahmidtpwttqg
    tkqliewieakgltiksavvthfhedasgdipllndlkiktyatsltnkllklnqkevss
    deissntfefidgvasvfypgaghtednivvwlpnekilfggcfvkslknknlgytgdan
    isewpnsmqkvinrypdaklvvpghgevgdvsllkhtqalalsaaasnkkinkd
    

    Sequence, based on observed residues (ATOM records): (download)
    >6lfdD (D:)
    gtkelklkklsdnvyqhisykrvepwgligasglvvingteahmidtpwttqgtkqliew
    ieakgltiksavvthfhedasgdipllndlkiktyatsltnkllklnqkevssdeissnt
    fefidgvasvfypgaghtednivvwlpnekilfggcfvkslknknlgytgdanisewpns
    mqkvinrypdaklvvpghgevgdvsllkhtqalalsaaa